Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g0901 ATGAAGAGGAACAGTTTGAGCACAACCTTGAAGGATTACATGACTCACAACAACAACACTACTGTCACCAGCAGCAGCAAGAGCCCAATAATGATAAAAGAGTTATCATCATCCAGCTATGCCAACAAGAACCAAATGGTGAAAGAGCTTTGGGACTGCAATGCCAATAACAATGGAGAGGAATACATGAATGGTTTCCCATGGCCACCAAGGTCATACACTTGCAGCTTCTGCAGAAAGGAGTTCAAGTCTGCACAAGCACTTGGTGGCCACATGAATGTTCATAGGAGGGATAGAGCAAGGTTGAGGCAGTCACCTCCAGTAAGTACTACTGATCATCATCATGGTCAAGGCCCTATGCTGAACCTTAACCTTAACCCTACTACTACTAACCCTAGCTTCTCAACCTCATCTTTGTCCTTCTTACCATCATCATCATCATCAACATCTTCTGCAAATCAAAGAGCTGCCACTTCCACATTGCCCTTGTTTGTTTCTACTCCTCCTCCTCCTCCTCCTGCTTCACCTCCTGAGTTGAAGAGATGGGTTGTTATGGATGGCATCCTCGTGAGCCCTTTGAGTACAAAGACCTCATCATCAGAGCCCACAAAACCCAAAATTGCAGACCAATCTTTATCTGGGGTTGGAGGATATGATGCTTTTACTAGAGAAGATGGATGTAAAATCTTGAAGAAAGCTGAGATCCTCAGGATGGACTTGGAGATAGGTTTGCCAAGAAATTATGATTTAGATCTGGAGCTTCGTTTGGGTACTTACTCTTAG 783 0.4406 MKRNSLSTTLKDYMTHNNNTTVTSSSKSPIMIKELSSSSYANKNQMVKELWDCNANNNGEEYMNGFPWPPRSYTCSFCRKEFKSAQALGGHMNVHRRDRARLRQSPPVSTTDHHHGQGPMLNLNLNPTTTNPSFSTSSLSFLPSSSSSTSSANQRAATSTLPLFVSTPPPPPPASPPELKRWVVMDGILVSPLSTKTSSSEPTKPKIADQSLSGVGGYDAFTREDGCKILKKAEILRMDLEIGLPRNYDLDLELRLGTYS* 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g0901 260 Pfam C2H2-type zinc finger 73 97 - -
Dod10g0901 260 SUPERFAMILY beta-beta-alpha zinc fingers 70 99 IPR036236 -
Dod10g0901 260 PANTHER OS07G0101800 PROTEIN 21 258 - -
Dod10g0901 260 SMART c2h2final6 73 95 IPR013087 -
Dod10g0901 260 MobiDBLite consensus disorder prediction 89 155 - -
Dod10g0901 260 ProSitePatterns Zinc finger C2H2 type domain signature. 75 95 IPR013087 -
Dod10g0901 260 Gene3D Classic Zinc Finger 69 117 - -
Dod10g0901 260 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 21 258 - -
Dod10g0901 260 MobiDBLite consensus disorder prediction 104 155 - -
Dod10g0901 260 ProSiteProfiles Zinc finger C2H2 type domain profile. 73 100 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g0901 Dod-Chr10 26747171 26747953 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g0901 34 257 C2H2 Transcription Factor Family AT3G23130 37.004 1.25e-31 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dod10g0901 zf-C2H2_6 1.6e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g0901 - - var:108333719 211.075