Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g0851 ATGAAGATTCAGTGCAACGTGTGTGAGGCTGCGGAGGCGAAGGTTCTGTGCTGTGCTGATGAGGCTGCGCTGTGTTGGGAGTGTGATGAGAAGGTCCATGCTGCTAACAAGCTTGTCAGCAAGCACCAGAGGGTTCCTCTTTCCATGTCTTCTTCTCATATGCCAAAATGTGATATTTGTCAGGAAGCATTTGGCTATTTCTTCTGTCTAGAGGACCGAGCTTTGCTGTGCAGAAAATGCGATTTGGCAATACACACTGCAAATGCTTATGTCTCTGGCCATCAAAGGTTTCTTCTCACTGGTGTAAGAGTAGGCCTTGAAGCAACTGAGCATGCTGGTGCTTCCTCAATTTTTTTGAAGTCAGATTCTGGGGAGAAAATTTCTGACACAAAGTCCTCTTCTGTGTCTGGAAAGGTTTCTACAATGCCCCAGTCATTGGATTACAATGAAGCATTACCAATTGAATTTGGGGTAGTTGGGGAGTTACCACCAGCCAAGGTGTCTTATGGTGGTGGTTCTACCGTCGGAAACATCTCACAGTGGCCGATCGATGAATTTCTCAGCATCAATGATTTTAGTCAGAATTATAATTACATGGAAGGATCGTCAAAGCCTGACAGTGGTAAGCTTGGGGATTCTGATTCTCCTGTCTTAAGATCAAGTGAAGAAGAAATGGAGGACGATGAATGCTTGGGGTGCGTCCCGGATTCATCCTGGACAGTTCCTCAGATCCCTTCTCCTCCTACAGCTTCAGGGTTGTACTGGCCAAAAGACCCTCCGTATTCATCTCACAATGCTATGTTTGTTCCTGATATATGCCGTTCTCCCATGCAGCAGACTCGGGGTAGTACTATTCTTTCAAGACGGAGAAGGCATCTTTAA 882 0.4592 MKIQCNVCEAAEAKVLCCADEAALCWECDEKVHAANKLVSKHQRVPLSMSSSHMPKCDICQEAFGYFFCLEDRALLCRKCDLAIHTANAYVSGHQRFLLTGVRVGLEATEHAGASSIFLKSDSGEKISDTKSSSVSGKVSTMPQSLDYNEALPIEFGVVGELPPAKVSYGGGSTVGNISQWPIDEFLSINDFSQNYNYMEGSSKPDSGKLGDSDSPVLRSSEEEMEDDECLGCVPDSSWTVPQIPSPPTASGLYWPKDPPYSSHNAMFVPDICRSPMQQTRGSTILSRRRRHL* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g0851 293 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 290 - -
Dod10g0851 293 Pfam B-box zinc finger 54 95 IPR000315 GO:0008270
Dod10g0851 293 SMART bboxneu5 4 47 IPR000315 GO:0008270
Dod10g0851 293 SMART bboxneu5 52 99 IPR000315 GO:0008270
Dod10g0851 293 Gene3D Classic Zinc Finger 1 92 - -
Dod10g0851 293 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Dod10g0851 293 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Dod10g0851 293 MobiDBLite consensus disorder prediction 198 229 - -
Dod10g0851 293 CDD Bbox1_BBX-like 5 47 - -
Dod10g0851 293 PANTHER B-BOX ZINC FINGER PROTEIN 18 1 290 - -
Dod10g0851 293 CDD Bbox1_BBX-like 56 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g0851 Dod-Chr10 24465324 24467345 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g0851 1 293 C2C2-CO-like Transcription Factor Family AT1G78600 48.338 3.03e-92 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Dod10g0851 zf-B_box 9.9e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g0851 - - gmx:100790959 456.832
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod10g0851 10 24465324 24467345 Dod10g0851 10 24465324 24467345 ECH