LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dod10g0786	ATGGCTGCGGTTGCTGAGATTTCAGCTGATGCCAACATCAACAAAATGGAGTCAAAGCCAAAAACACCAGAATCTGAATTCAGTGTTCAGAAGCTGGTTGACATGTTCACAAAGTTGAATCCTTTGGCCAAGGAGTTCTTCCCTTCATCATACCCTCACAACAACAACAATCATCAGGGTTATGATAATCAGTTCTCACCAATCAATTTTCTGGTCAACATTAAGCCCTCATCACCCGATGATAATAATTTCCCCAACAACAGAAGGCGAAGAAATAATTTTAACCCAGCGAGAAGAAGGTTGAATGGAAGATCACTGAAGGCTCAGAGAGAAGATAGTGTCAGAAGAACAGTATATGTTTCTGATATTGATCAGCATGTTACTGAGGAGCGGCTTGCAGGCTTATTCAGCAACTGTGGACAAGTAATCGATTGTCGAATTTGTGGTGACCCGCATTCAGTTCTTCGTTTTGCTTTTGTCGAGTTTGCAGATGAGCATGGTGCGAGGGCAGCTTTAACCCTTGGTGGTACCATGCTTGGTTACTATCCAGTCAGGGTCCTTCCTTCAAAAACTGCTATCCTTCCTGTGAATCCTACATTTCTCCCTAGGTCAGATGATGAGCGGGAAATGTGCACCAGGACTGTCTACTGTACAAATATTGATAAAAAGATTTCTCAAGCTGAAGTGAAGAATTTTTTTGAAACAACTTGTGGCGAGGTTACGCGCTTGAGGCTTTTAGGGGACCAAGTGCATTCAACTCGAATTGCTTTTGTTGAATTTGCATTGGCAGAAAGTGCTATTATTGCACTGAATTGTAGTGGGATGCCCCTGGGAACCCAACCTATCAGGGTCAGCCCTTCAAAGACTCCTGTTAGGTCAAGGGTTGCTCGTCCAACTTCACACTAA	906	0.4338	MAAVAEISADANINKMESKPKTPESEFSVQKLVDMFTKLNPLAKEFFPSSYPHNNNNHQGYDNQFSPINFLVNIKPSSPDDNNFPNNRRRRNNFNPARRRLNGRSLKAQREDSVRRTVYVSDIDQHVTEERLAGLFSNCGQVIDCRICGDPHSVLRFAFVEFADEHGARAALTLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSDDEREMCTRTVYCTNIDKKISQAEVKNFFETTCGEVTRLRLLGDQVHSTRIAFVEFALAESAIIALNCSGMPLGTQPIRVSPSKTPVRSRVARPTSH*	302

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dod10g0786	301	SUPERFAMILY	RNA-binding domain, RBD	203	294	IPR035979	GO:0003676
	Dod10g0786	301	PANTHER	SERINE/ARGININE-RICH SPLICING FACTOR	1	301	-	-
	Dod10g0786	301	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	116	191	IPR000504	GO:0003723
	Dod10g0786	301	CDD	RRM2_CID8_like	209	290	IPR034825	-
	Dod10g0786	301	PANTHER	POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 9	1	301	-	-
	Dod10g0786	301	MobiDBLite	consensus disorder prediction	281	301	-	-
	Dod10g0786	301	SUPERFAMILY	RNA-binding domain, RBD	81	192	IPR035979	GO:0003676
	Dod10g0786	301	MobiDBLite	consensus disorder prediction	76	108	-	-
	Dod10g0786	301	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	213	289	IPR000504	GO:0003723
	Dod10g0786	301	MobiDBLite	consensus disorder prediction	76	91	-	-
	Dod10g0786	301	MobiDBLite	consensus disorder prediction	7	26	-	-
	Dod10g0786	301	CDD	RRM1_CID8_like	114	193	IPR034823	-
	Dod10g0786	301	Pfam	Ataxin-2 C-terminal region	35	50	IPR009818	-
	Dod10g0786	301	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	118	180	IPR000504	GO:0003723
	Dod10g0786	301	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	215	282	IPR000504	GO:0003723
	Dod10g0786	301	Gene3D	-	74	192	IPR012677	-
	Dod10g0786	301	Gene3D	-	201	295	IPR012677	-
	Dod10g0786	301	SMART	rrm1_1	117	187	IPR000504	GO:0003723
	Dod10g0786	301	SMART	rrm1_1	214	285	IPR000504	GO:0003723

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dod10g0786	Dod-Chr10	23157462	23164073	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dod10g0786	113	270	Eukaryotic Initiation Factors Gene Family	AT1G34140	26.087	1.13e-10	60.1

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Dod10g0786	-		-	gmx:100779109	470.314