Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g0650 ATGCAACAATCCACAAAACCATCTCATAATAGAAAGTACATGAAGCCAAAAACGCAATGGACCAAACGCTCCTTCTCGACCAAAACTTCCCTCTCTTCAAACCAACCGCCACACCCTCCAAAAACCCCACACCCCTACCCCCCTCCGCCGCCGGCGCCGGACAAAAACCCTAGCTCCGCCCAACCCACCACCACCCCCACAGCCGACTCCTCCTCCACATTATCCGCCACCGCAACTACTTTCGCGGACATCGGACTTGCCGAATGGGCGGTGAAGACGTGCAGGGAGCTCGGGATGCGGCGGCCGCGGCGCGTGCAGTCGCAGTGCATCCCGCGCGTGCTGGAGGGCGGCCACGTCCTCGGGATTGACGAGACAGGGAGCGGGAAGACGGCGGCGTTCGCGCTGCCGATCCTGCATCGACTGGCGGAGCACCCGTACGGCGTGTTCGCGTTGGTGGTGACGCCGACGAGGGAGCTGGCGTTTCAGCTGGCGGAGCAGTTCCGGGCGCTGGGGTCATGCCTGCACCTCCGGATCGCCGTGGTGGTCGGCGGCATGGACATGCTGAGGCAGGCGAAGGAGCTGGCGGCGAGGCCGCACGTTGTGATCGCCACGCCTGGGAGGATCAAGGCGTTGCTCGAGGACAATCCTGATATCCCTCCCGTCTTCTCCCGGACTAAGTTCCTTGTCTTGGATGAAGCAGATCGGGTCTTGGATGTTGGTTTTCAGGAAGAATTGAAATTTATCTTTAAGTGCTTACCTGAAAATAGGCAAAACCTGTTCTTTTCAGCAACAACAACAAGTAATCTGCAAAAGTTGCATGAGCGTTACCAGGATAAGCTGTATGTCTACGAGGCATATGAAGGCTTGAAAACAGTTGAAACACTTAAGCAACAGGTTATATTCATCCCCAAAAAGGTTAAGGAGGTATATTTGATGCATATTTTGTCTAAAATGGAAGATATGGACATCCGGTCTGCCATTGTATTTATCTCCACATGCAGAGATTGTCATCGTTTAAGTTTAATGCTGGACGTGCTTGATCTAGAAGCTGCAAGCTCTATATTCATTCAAATCACAGGCTCAGAGGCTTGA 1092 0.5412 MQQSTKPSHNRKYMKPKTQWTKRSFSTKTSLSSNQPPHPPKTPHPYPPPPPAPDKNPSSAQPTTTPTADSSSTLSATATTFADIGLAEWAVKTCRELGMRRPRRVQSQCIPRVLEGGHVLGIDETGSGKTAAFALPILHRLAEHPYGVFALVVTPTRELAFQLAEQFRALGSCLHLRIAVVVGGMDMLRQAKELAARPHVVIATPGRIKALLEDNPDIPPVFSRTKFLVLDEADRVLDVGFQEELKFIFKCLPENRQNLFFSATTTSNLQKLHERYQDKLYVYEAYEGLKTVETLKQQVIFIPKKVKEVYLMHILSKMEDMDIRSAIVFISTCRDCHRLSLMLDVLDLEAASSIFIQITGSEA* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g0650 363 PANTHER ATP-DEPENDENT RNA HELICASE DDX49-RELATED 77 350 - -
Dod10g0650 363 Gene3D - 54 281 IPR027417 -
Dod10g0650 363 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 79 107 IPR014014 GO:0003724
Dod10g0650 363 MobiDBLite consensus disorder prediction 36 57 - -
Dod10g0650 363 MobiDBLite consensus disorder prediction 1 74 - -
Dod10g0650 363 Gene3D - 282 356 IPR027417 -
Dod10g0650 363 MobiDBLite consensus disorder prediction 19 35 - -
Dod10g0650 363 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 110 283 IPR014001 -
Dod10g0650 363 MobiDBLite consensus disorder prediction 58 74 - -
Dod10g0650 363 Pfam DEAD/DEAH box helicase 104 272 IPR011545 GO:0003676|GO:0005524
Dod10g0650 363 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 229 237 IPR000629 -
Dod10g0650 363 SMART ultradead3 98 298 IPR014001 -
Dod10g0650 363 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 74 279 IPR027417 -
Dod10g0650 363 CDD DEADc_DDX49 81 284 - -
Dod10g0650 363 PANTHER RNA HELICASE 77 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g0650 Dod-Chr10 20255771 20267521 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g0650 80 340 Eukaryotic Initiation Factors Gene Family AT3G13920 30.337 6.46e-26 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g0650 K14778 - gmx:100798597 496.893