Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g0648 ATGGCTATAAAAGCAGCAACAAGGAGGACTGAATGTTTTGGTGGGACACCAACCTGCAAGTACTGGCTAGCTGGGAGATGCAACAGAAATCCTTGCAGGTTTCTGCACAGCCTAACACCATCACAACCTGCTTCTTATTATCATGCCAACACTCCTTATTACAAGTATACGAGGAAGCCCAATTCCTCTGCTGAGAGGACAAACAAGTACTCAAAGTCAGAGAAGCCCCGTTCCTCAAAGTATGAATCAAAGGTAGGGAAGCTTGAAGTATCGGTTGAAAAGACTGGAGGTGCAGCAGATATTGCTAAGGCTTCTCAGAACCCTTCAGTGAGTATCTGCAAATATTGGATGAATGACAATTGCGTACAGGGGGACCAGTGTCAGAATTTGCATTCTTGGTCTTTTGGTGATGGGCTCTCGACATTAGCAAAGCTTCATGAACACAAAAAGGTTATCACTGGCATTGCACTTCCAGTTGGATGGGACAAGCTTTATTCTGGCAGTACTGATGGGACACTGCGCACATGGGACTGCCACACTGTAGAAATTACATCTTTGATCAGTGAGGGGCCATGGGTTTTTGCTGGCGTGAAGAATGCTGTTAAGGCTTGGAATGTCCAGACTGATTCTGAATTTACTCTTGATGGACCTAAGGGGCAAGTCCTTTCCATGATTGTTGGCAATGATACCCTTCTTGCTGGAGCAGAGGATGGTGTTATTTATGCATGGAGAGGCAGCTCCGATCCTGAAGCTAAGTCTCCTTTCCAGCTGGTTGCATCACTAGGTGGCCACACAAAAGCTGTCACTTGTCTGACTGTTGGAAGGAACATACTGTACTCAGGGTCTGCGGACCACACCATAAAGGTTTGGGACCTTGAGACATTAGAGTGTAAAGTGACACTCAGCGGGCATACTGACATAGTCACATCCCTTATTTGTTGGGACGAATATTTGTTATCGAGTTCAATTGATTGCACACTTAAGATCTGGGAATGCACTGAAGATGGAACTTTGAAAGTGACATATGCGCACACTGAGGAAAATGGTATTCTTGCACTTTGTGGGATGACTATTGCAGCTCCTTACCGTGTCTGCTTCTACAGATTCTTAGAGAGGGGTCGATTATTTGCAAGACGTGAAGTTCGATCATTTGAAATAGGACCTGATGGACTCTTCTTCACCGGAGATGGGACTGGTTTGCTGACGGTGTGGAAGTGGTTGGAAGAGCCCAAAGTGCCATCCTCTTGA 1248 0.4575 MAIKAATRRTECFGGTPTCKYWLAGRCNRNPCRFLHSLTPSQPASYYHANTPYYKYTRKPNSSAERTNKYSKSEKPRSSKYESKVGKLEVSVEKTGGAADIAKASQNPSVSICKYWMNDNCVQGDQCQNLHSWSFGDGLSTLAKLHEHKKVITGIALPVGWDKLYSGSTDGTLRTWDCHTVEITSLISEGPWVFAGVKNAVKAWNVQTDSEFTLDGPKGQVLSMIVGNDTLLAGAEDGVIYAWRGSSDPEAKSPFQLVASLGGHTKAVTCLTVGRNILYSGSADHTIKVWDLETLECKVTLSGHTDIVTSLICWDEYLLSSSIDCTLKIWECTEDGTLKVTYAHTEENGILALCGMTIAAPYRVCFYRFLERGRLFARREVRSFEIGPDGLFFTGDGTGLLTVWKWLEEPKVPSS* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g0648 415 MobiDBLite consensus disorder prediction 57 86 - -
Dod10g0648 415 SMART WD40_4 138 177 IPR001680 GO:0005515
Dod10g0648 415 SMART WD40_4 207 244 IPR001680 GO:0005515
Dod10g0648 415 SMART WD40_4 368 405 IPR001680 GO:0005515
Dod10g0648 415 SMART WD40_4 294 331 IPR001680 GO:0005515
Dod10g0648 415 SMART WD40_4 254 291 IPR001680 GO:0005515
Dod10g0648 415 Pfam WD domain, G-beta repeat 296 330 IPR001680 GO:0005515
Dod10g0648 415 Pfam WD domain, G-beta repeat 256 291 IPR001680 GO:0005515
Dod10g0648 415 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 48-LIKE ISOFORM X1 17 413 - -
Dod10g0648 415 Gene3D - 179 415 IPR015943 GO:0005515
Dod10g0648 415 ProSiteProfiles Trp-Asp (WD) repeats profile. 261 300 IPR001680 GO:0005515
Dod10g0648 415 SMART c3hfinal6 13 38 IPR000571 GO:0046872
Dod10g0648 415 SMART c3hfinal6 107 133 IPR000571 GO:0046872
Dod10g0648 415 ProSiteProfiles Trp-Asp (WD) repeats profile. 145 177 IPR001680 GO:0005515
Dod10g0648 415 SUPERFAMILY WD40 repeat-like 117 405 IPR036322 GO:0005515
Dod10g0648 415 ProSiteProfiles Zinc finger C3H1-type profile. 13 39 IPR000571 GO:0046872
Dod10g0648 415 ProSiteProfiles Zinc finger C3H1-type profile. 107 134 IPR000571 GO:0046872
Dod10g0648 415 ProSiteProfiles Trp-Asp (WD) repeats profile. 301 340 IPR001680 GO:0005515
Dod10g0648 415 ProSitePatterns Trp-Asp (WD) repeats signature. 278 292 IPR019775 -
Dod10g0648 415 PRINTS G protein beta WD-40 repeat signature 164 178 IPR020472 -
Dod10g0648 415 PRINTS G protein beta WD-40 repeat signature 318 332 IPR020472 -
Dod10g0648 415 PRINTS G protein beta WD-40 repeat signature 278 292 IPR020472 -
Dod10g0648 415 MobiDBLite consensus disorder prediction 68 86 - -
Dod10g0648 415 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 261 294 - -
Dod10g0648 415 PANTHER - 17 413 IPR044715 -
Dod10g0648 415 Gene3D - 13 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g0648 Dod-Chr10 20240897 20243940 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g0648 231 351 Miscellaneous Gene Families AT5G08390 29.600 7.68e-09 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Dod10g0648 WD40 0.0045 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g0648 - - ahf:112726849 542.347