Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g0642 ATGGATTCACCTAGTAGTACAGAAAGGAAGACCAATGACACCATTATAGTGTATACAAGAAGAAGAAAAGGCACTAGTTCTGGAAATAATGTATCATCTCCCAATGAAGTCATTTTATCAAGTTCGAAGTATTCTTTGTCTAAAACTGACGGCTCACGTGAAATTGGAGATGATGGTAGTTACTTTGAATGTGAGCTATGTAATGATGGGGGAGAACTGCTATGCTGTGATGCTTGCCCTCGTACGTTTCATATTACATGCCTTGCTCTGAAGTCTGTTCCTAATGGAGAATGGCGATGCCCAAACTGCTCTGATAATAGTGATCTTTCCAAGAACATACAAAGTTCAAATCTTTCCAGGAATATACAAAGTTCGAAGAATGTAAACTCCAAAAAAGACATCTCATCTAAGAAAGCAGAAGGTGGCTGTAGCTTGTCAAGTTCAAAGTGCAAGAAGGCATCAAATTAA 468 0.3846 MDSPSSTERKTNDTIIVYTRRRKGTSSGNNVSSPNEVILSSSKYSLSKTDGSREIGDDGSYFECELCNDGGELLCCDACPRTFHITCLALKSVPNGEWRCPNCSDNSDLSKNIQSSNLSRNIQSSKNVNSKKDISSKKAEGGCSLSSSKCKKASN* 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g0642 155 ProSiteProfiles Zinc finger PHD-type profile. 61 106 IPR019787 -
Dod10g0642 155 MobiDBLite consensus disorder prediction 119 155 - -
Dod10g0642 155 Pfam PHD-finger 64 104 IPR019787 -
Dod10g0642 155 PANTHER PROTEIN CHROMATIN REMODELING 4 18 138 - -
Dod10g0642 155 MobiDBLite consensus disorder prediction 140 155 - -
Dod10g0642 155 SUPERFAMILY FYVE/PHD zinc finger 44 104 IPR011011 -
Dod10g0642 155 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 56 136 IPR013083 -
Dod10g0642 155 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 18 138 - -
Dod10g0642 155 SMART PHD_3 63 104 IPR001965 -
Dod10g0642 155 MobiDBLite consensus disorder prediction 1 34 - -
Dod10g0642 155 ProSitePatterns Zinc finger PHD-type signature. 64 103 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g0642 Dod-Chr10 20158261 20165332 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g0642 55 104 PHD Transcription Factor Family AT4G14920 52.000 4.51e-15 69.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Dod10g0642 PHD 1e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g0642 - - lja:Lj0g3v0315929.1 152.91