Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g0602 ATGTCGAGGACGTTGGTGCAACCGATAGGGCAGAAGAGGCTAACCAACGTGGCGGTTGTGCGTCTCAAGAAGCATGGCATGCGCTTCGAGATAGCCTGTTATCCTAACACCGTCCTTTCTTGGCGTTCTGGCGTGGAGAAGGACTTGGATGAAGTGTTGCAGTCACACACTGTTTATTCCAATGTTTCCAAAGGGGTTCTTGCCAAGTCAAAGGATTTGATTGCTGCTTTTGGGACTGATGACCAGACCAAGATATGCTTAGAGATTTTGAAGAAAGGGGAGCTTCAGGTTGCTGGGAAAGAGAGGGAATCTTTGCTGTCGAGTCAGTTTAGGGATATTGCCACCATTGTGATGCAAAAGACTTACAATCCTGAGACTCAGCGTCCTTACACTATCAGCATGATTGAGCGCCTCATGAGGGAGATTCATTTCGCTGTTGATCCAAATAGCAGCTCCAAGAAGCAGGCTCTGGAGTTGATTCAGGAGCTTCAAAAGCACTTCCCTATAAAACGCTGTCCATTAAGAATACGAGTTACTGCTCCTGAGGAGAAAATGCCTAGCCTTTTAGAAAAGCTGAATGAGTGGAAGGCAACCAATATTTCTAAAGAAGAATCTGCTGGTCAGCTATATGTTATTTTCGAAGTGGAACCTGGTCTATATAAGGGCTGTCATGACTTTGTTATGAATAACATGCATGGAAGATTTGAGGTTCTTGCACACTCTCTTTATGTGGATGGGGATACCCAGGTGGAGCAATACAACGATTATGAGGATATGCCTGCACCATTGCCCAAAGAAACTCGTGAATCTGTGCTTGAACTGAATGATAAACTTCAAAAGCAGACGATTTCATCGTCGAGTAAGCCTAGTGAGGGGCAGGGGCAGGGGCAAGCAACAAAAGCCAAACAAGTGCAGCACGTGTAA 924 0.4556 MSRTLVQPIGQKRLTNVAVVRLKKHGMRFEIACYPNTVLSWRSGVEKDLDEVLQSHTVYSNVSKGVLAKSKDLIAAFGTDDQTKICLEILKKGELQVAGKERESLLSSQFRDIATIVMQKTYNPETQRPYTISMIERLMREIHFAVDPNSSSKKQALELIQELQKHFPIKRCPLRIRVTAPEEKMPSLLEKLNEWKATNISKEESAGQLYVIFEVEPGLYKGCHDFVMNNMHGRFEVLAHSLYVDGDTQVEQYNDYEDMPAPLPKETRESVLELNDKLQKQTISSSSKPSEGQGQGQATKAKQVQHV* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g0602 307 Gene3D - 1 96 IPR036786 -
Dod10g0602 307 Pfam Shwachman-Bodian-Diamond syndrome (SBDS) protein 16 102 IPR019783 -
Dod10g0602 307 Pfam SBDS protein, C-terminal domain 175 238 IPR046928 -
Dod10g0602 307 Gene3D - 100 172 IPR037188 -
Dod10g0602 307 PANTHER BNAANNG06530D PROTEIN 1 301 - -
Dod10g0602 307 MobiDBLite consensus disorder prediction 280 307 - -
Dod10g0602 307 PANTHER RIBOSOME MATURATION PROTEIN SBDS 1 301 IPR039100 -
Dod10g0602 307 TIGRFAM RNA_SBDS: rRNA metabolism protein, SBDS family 13 226 IPR002140 GO:0042256
Dod10g0602 307 Gene3D - 174 251 - -
Dod10g0602 307 SUPERFAMILY Hypothetical protein AF0491, middle domain 98 171 IPR037188 -
Dod10g0602 307 SUPERFAMILY FYSH domain 13 96 IPR036786 -
Dod10g0602 307 Pfam SBDS protein, domain II 111 171 IPR018978 GO:0042254
Dod10g0602 307 ProSitePatterns Uncharacterized protein family UPF0023 signature. 46 65 IPR018023 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g0602 27 301 C2H2 Transcription Factor Family AT1G43860 58.741 7.18e-113 328