Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g0597 ATGGCTGGAGAAACATTTACAGATTATCGGCCGGCAAAAGTATCTATGGGTCCTCCACACCCAGATCCTGTTGTGGAGACCTCTTCCTTGTCTGCTGTGCAGCCACCTGCTCCTACTTATGATCCAAAAATTAAAGATCATTTGGAAAGTTCAAAGGCTTTGTCATGTTTGCAGATAGAGACATTGGTCTATGCTTGTCAGGTTGGTTTTTCCCCCCCAATGTGGATTTCTGTTGGTTCAGATTTGAAGTTTGATGCCAGGAGAGACTTGGATGATATGGGTGCAACTTGCATTAAAGTGCATGCCCTGAACAAACTGCCTTATTCTAAGCTCGAATCGAAGTCTGTTGGAGTCAGGGATGGAGTTATTTTCTTGACATACAGTAGCCTCATAGCATCTTCTGAGAAAGGCACCTCTCGTCTCAACCAGCTTGTGCAGTGGTGTGGGCGACAGTTTGATGGTCTTATCATTTTTGATGAGTGTCACAAAGCAAAAAACTTGGTTCCAGAAGCTGGAAAGCGGCCAACACGAACTGGTGAAGCGGTGCTTAATATACAGGCTCGATTACCTGAAGCTCGTGTCGTTTATTGCTCAGCCACCGGTGCATCTGAATCTCGCAATATGGGTTATATGGTTCGACTTGGACTTTGGGGAGATGGAACTTCGTTTTGTGATTTCAAAGAATTTCTAGGTGCTCTTGAAAGAGGGGGTGTTGGAGCTCTAGAACTAGTTGCCATGGACATGAAAGCAAGGGGGATGTATTTATGTCGGACCCTTAGCTACAAGGGTGCTGACTTTGAAGTTGTTGAAGCACCATTAGAGGATAAAATGATGGTCATGTATGAAAAGGCTGCGAAATTTTGGGCAGAATTGCGTGGGGACTTACTATCTGCTGGTGCCTCCCTAACTAGGGAACGTAGGCGTACGCTGTGGGGATTATACTGGGCAAGCCACCAGCGTTTCTTTAGACACATGTGTATGTCTGCTAAAGTACCTGCGACGGTGAGACTAGTGAAGCAATCACTACAGGGAGGCAAGTGTGTAGTCATAGGACTGCAGAGTACTGGTGAAGCTAGGACAGAAGAAGCTGTGGCAAAATATGGCTTTGAGCTTGATGACTTTGTTTCTGGACCTCGAGAATTGCTTCTAAAATTTGTAGAAGACAATTACCCTTTGCCAGCAAAGCCTGAACTTCCTCCTGAAGATGATGCAATAACGGAAGTTCAGAGGAAGAGGCATTCTGGAAGTCCTGGCATGTCTGGAAAAGGGAAGGTCAGAAAAGTGGATAAGTGGCAGTCTTCAAGTGATATTGAAAGTGATGAAGAATCTGAAACTGCCTGTGCTCCTGAATCGAGTGAATCTGATTATGTACCAGAAGGAGAAGAAAGTGCTGCCTCCAGTCTTGAAACTAGTGACTCTGATTATGAAGAACTTCAGATCTGTGAAATTTGCCGTACTGAAGAGGAAAAAGAAAATATGCTCCAGTGTTCCTGCTGTGGTAAATTAGTCCATCAAGCATGCTTGATGCCTCCTATTCACAATTTTGTACTTGTAAAATGGTCATGCCATTCGTGCCAGGGAAAAACAGACTATGATTATGCAACACATGCTGACCTAACTGAAGTCCAGAAGAGGTATGATGTAGCTTTGGAGCGCAAGACACAAATTTTAGAGACTATTCGATCTATGGATCTTCCAAATAATCCCCTGGATGATATCATTGACCAGTTAGGAGGCCGCAAAAAAGTTGCAGAAATCACAGGAAGGAAAGGCATGTTTGTGAGGGCCCCTTGTGGAAAGGGTGTAACTTATCAGGCTCGTAATACAAAGGATGTCACTATGGAGATGGTTAACATGCATGAAAAACAGCTCTTTATGGATGCTAAGAAGTTAGTTGCTATTATCTCTGAAGCAGGATCAGCTGGTGTTTCATTGCAGGCTGATAGAAGGGTTAGGAATCAGAAAAGAAGGGTTCATATAACTTTAGAACTTCCATGGAGTGCTGACAAAGCAATTCAGCAGTTTGGAAGAACTCATCGGTCAAATCAAGCTTCAGCTCCGGAGTACAGGATACTCTTTTCTAACCTTGGTGGTGAACGAAGGTTTGCCTCTGTTGTTGCGAAGAGATTAGAGTCTCTTGGTGCTTTGACTCAGGGGGACCGCAGGGCTGGAGGACCTTCATTAAGTGCTTATAATTATGATAGTGCTTATGGAAAGAGGGCTCTGGTGATTTTGTACGAAGGAATAATGGATCAGGATTCTCTGCCTGTTGTTCCTCCGGGCTGTTTGTCTGACAGACCAGACACAATCCAAGATTTTATTTTGGAAGCAAAAGATGCTCTTGTATCTGTTGGAATAGTTAAGAACACAACTCTTGGAAACGGTGAAGATTTCCAAAGTTTACCTGGCCACATTACTGAATCAGATATGCAGGATGTTGGACGATTCCTCAATCGGATTCTGGGACTACCTCCTGATATTCAGAACAGGCTGTTCGAGTTATTTGTGAGTATATTGGATCTTCTCATTCAGAATGCTCGTATTGAAGGTAACCTTGATACGGGCATTGTTGACATGAAAGCTAATGTCATAAAATTACAAGGGACCCCAAAGACAGTTTACATTGATCAAGTGACTGGGGCTTCAACTGTTCTGTTCACATTCATCTTGGATCGTGGGACCACATGGGAGTTGGCAAATACCATACTTAATGAGAAGCAGAAGGATGGGCTTGGTTCAGCCCATGATGGTTTCTATGAGTCCCAAAGGGAGTGGTTTGGAACACGTCATTTCATTTTAGCTTTTGAAAGTTCTGTTTCAGGTATGTATAAGATAGTTCGTCCTGCTGTTGGAGAATCACTTCAGGAGATGCATCTGATGGAATTAAAACGTAAATATAGAAAAGTTTCATACTTGGAGAATACTCGAAAAGGTTGGGAACATGAATATGAAGTTTCATCTAAACAGTGCATGCATGGTCCCAAATGTAAGCTTGGAAGCTACTGTACAGTTGGCCGAAGACTACAGGAAGTAAATATCTTGGGTGGTCTCATTCTTCCGCTTTGGGGAGCCATTGACATGGCCCTTAAAAAGCAGGCTCGCCCAAACCATAGGAGGCTAAAAGTTGTTCGCATAGAAACTACTTCGGATAACCAGCATGTTGTTGGGCTTTTTGTTCCTAATGCAGCTGTTAAAACTGTGCTTCAAGGTTTAGAATGGGTTCAAGGTGAAGATTGA 3237 0.4337 MAGETFTDYRPAKVSMGPPHPDPVVETSSLSAVQPPAPTYDPKIKDHLESSKALSCLQIETLVYACQVGFSPPMWISVGSDLKFDARRDLDDMGATCIKVHALNKLPYSKLESKSVGVRDGVIFLTYSSLIASSEKGTSRLNQLVQWCGRQFDGLIIFDECHKAKNLVPEAGKRPTRTGEAVLNIQARLPEARVVYCSATGASESRNMGYMVRLGLWGDGTSFCDFKEFLGALERGGVGALELVAMDMKARGMYLCRTLSYKGADFEVVEAPLEDKMMVMYEKAAKFWAELRGDLLSAGASLTRERRRTLWGLYWASHQRFFRHMCMSAKVPATVRLVKQSLQGGKCVVIGLQSTGEARTEEAVAKYGFELDDFVSGPRELLLKFVEDNYPLPAKPELPPEDDAITEVQRKRHSGSPGMSGKGKVRKVDKWQSSSDIESDEESETACAPESSESDYVPEGEESAASSLETSDSDYEELQICEICRTEEEKENMLQCSCCGKLVHQACLMPPIHNFVLVKWSCHSCQGKTDYDYATHADLTEVQKRYDVALERKTQILETIRSMDLPNNPLDDIIDQLGGRKKVAEITGRKGMFVRAPCGKGVTYQARNTKDVTMEMVNMHEKQLFMDAKKLVAIISEAGSAGVSLQADRRVRNQKRRVHITLELPWSADKAIQQFGRTHRSNQASAPEYRILFSNLGGERRFASVVAKRLESLGALTQGDRRAGGPSLSAYNYDSAYGKRALVILYEGIMDQDSLPVVPPGCLSDRPDTIQDFILEAKDALVSVGIVKNTTLGNGEDFQSLPGHITESDMQDVGRFLNRILGLPPDIQNRLFELFVSILDLLIQNARIEGNLDTGIVDMKANVIKLQGTPKTVYIDQVTGASTVLFTFILDRGTTWELANTILNEKQKDGLGSAHDGFYESQREWFGTRHFILAFESSVSGMYKIVRPAVGESLQEMHLMELKRKYRKVSYLENTRKGWEHEYEVSSKQCMHGPKCKLGSYCTVGRRLQEVNILGGLILPLWGAIDMALKKQARPNHRRLKVVRIETTSDNQHVVGLFVPNAAVKTVLQGLEWVQGED* 1079
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g0597 1078 ProSitePatterns Zinc finger PHD-type signature. 481 525 IPR019786 -
Dod10g0597 1078 ProSiteProfiles Zinc finger PHD-type profile. 478 528 IPR019787 -
Dod10g0597 1078 SUPERFAMILY FYVE/PHD zinc finger 468 529 IPR011011 -
Dod10g0597 1078 PANTHER STRAWBERRY NOTCH-RELATED 2 68 IPR026741 GO:0006355
Dod10g0597 1078 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 119 236 IPR027417 -
Dod10g0597 1078 SMART PHD_3 480 526 IPR001965 -
Dod10g0597 1078 PANTHER STRAWBERRY NOTCH-RELATED 74 1076 IPR026741 GO:0006355
Dod10g0597 1078 MobiDBLite consensus disorder prediction 423 437 - -
Dod10g0597 1078 Pfam P-loop containing NTP hydrolase pore-1 19 67 IPR039187 -
Dod10g0597 1078 Pfam P-loop containing NTP hydrolase pore-1 74 282 IPR039187 -
Dod10g0597 1078 MobiDBLite consensus disorder prediction 407 471 - -
Dod10g0597 1078 Pfam PHD-finger 480 527 IPR019787 -
Dod10g0597 1078 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 463 551 IPR013083 -
Dod10g0597 1078 PANTHER OS08G0223700 PROTEIN 2 68 - -
Dod10g0597 1078 Pfam C-terminal domain on Strawberry notch homologue 568 858 IPR026937 -
Dod10g0597 1078 PANTHER OS08G0223700 PROTEIN 74 1076 - -
Dod10g0597 1078 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g0597 Dod-Chr10 19114025 19151717 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Dod10g0597 Helicase_C_4 2.3e-105 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g0597 - - gmx:100808670 1662.12