LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dod10g0587	ATGCCAGCTTTGATGTCAGCTAGGTTTCTTCTTCTTCTTGGAGAGTCATTACCCATTAGAAGGGCTTTATCCGCTTCTAGGACTGCTTTCTTGCACACAACAAGTGTCCATTGTATGAGCCAAGTGGAACAACCCCATCATGGCTCCCTCACCCTTTCAAGTGTTGGTTTCCAAACTGAAACTGAACCAATCAGAAAAACCAATTCAAGCAAGATCAACCCATTTGGCTCCTCCTCTGAGTCCCTCAAGAGCAAAGGGAAGCAGCAACCTTTTGGAATCAATGAGAAGAAGAAGAAGAAGAAGAGGCAGCAAATTGAGGCTGCCCCATTTGCTGCAAAGTCATTTTCTGAACTTGGATTGCCACATGTGTTGATTGAGAGGCTAGAAAATGAGGGGTTTAATGTTCCAACTGAGGTTCAGTCTGCTGCAGTTCCAACCATTCTGAAGGACCATGATGTCATAATTCAGTCTTACACGGGCTCCGGGAAGACGTTGGCTTATCTGCTTCCTATATTATCCTCTATTGGTCCATTGAGGAATAATAAGATTACGGAAGGCGACGGCGACGGCGACGGTGGTGGTGGTGGTGGTGGTGATGCTGGGAGGAAAATGGGAATAGAAGCAGTGGTTGTTGCTCCCTCTAGGGAGCTTGGGATGCAGATAGTGAGGGAGTTTGAGAAGATACTAGGAGTGGAGAACAAGAAAGTTGTTCAGCAGCTTGTTGGGGGCGCGAACCGGACTAGGCAGGAAGAAGCTCTCAAGAAGAATAAGCCTGCCATTGTTGTTGGCACGCCTGGTAGGATAGCGGAGCTTAGCACTGCCGGGAAGCTTCGCACCCATGGCTGCCGTTATCTGGTGCTGGATGAGGTTGATGAGCTCCTTTCCTTCAATTTCCGGGAGGACATGCACCGGATATTGGAGCATGTAGGGAGGAGATCAGGTGCAGGTGCAGACCCGAATCCGAATGTTAGGAGGGCTGAGCGCCAGTTAATTATGGTGTCTGCAACCGTGCCGTTTTCTGTTGTGAGGGCAGCCAGGAGCTGGGGTAGTGATCCTCTTCTTGTCCAAGCAAAGAAAGTTGTCCCAATTGATACCATTTCGCCTTCTGAACCTGTCAGTTTGTCGAGGCCTTCATCCGGCTCTGCTCCTAACCAATCTATGCCATCTCAGGCATCAGTGGAAAGCCTGCCTCCTGCATTGAAACACTATTACTGTCTAGCAAGGTTGCAGCACAAAGTGGATAGCTTGAGAAGGTGTATTAATGCCCTGGATGCCAAGGTTGTAATAGTTTTCATGAACAACTCTAAGCAGCTGAAGGATGTTGTCTTCAAGCTGGAGGCCCGTGGGGTGGATGCTGCAGAGCTACATGGGGATCTTGGGAAGCTTGCCAGGTCATCAACTCTTAAGAAATTCAAGAATGGTGAGGTGAGAGTTCTGGTGACCAATGAATTGTCGGCGAGGGGTTTGGATGTGGCGGAATGTGATCTTGTGGTTAATCTGGACTTGCCTACGGATTCGATTCACTATGCTCACCGAGCTGGCCGGACTGGTCGGCTTGGTAGGGAGGGTACGGTGCTGACCATATGTGAAGAGCCGGAAGTGTTTGTTGTGAAGAAAATGGAGAAGCAGCTTGGAGTTCCGATAGCATGCTGCGATTTCGTTGAGGGAAAGTTGCTTGTTGCTGAAGAAGAGAGAGCACTCAACACTATGAGAAAATGA	1719	0.4892	MPALMSARFLLLLGESLPIRRALSASRTAFLHTTSVHCMSQVEQPHHGSLTLSSVGFQTETEPIRKTNSSKINPFGSSSESLKSKGKQQPFGINEKKKKKKRQQIEAAPFAAKSFSELGLPHVLIERLENEGFNVPTEVQSAAVPTILKDHDVIIQSYTGSGKTLAYLLPILSSIGPLRNNKITEGDGDGDGGGGGGGDAGRKMGIEAVVVAPSRELGMQIVREFEKILGVENKKVVQQLVGGANRTRQEEALKKNKPAIVVGTPGRIAELSTAGKLRTHGCRYLVLDEVDELLSFNFREDMHRILEHVGRRSGAGADPNPNVRRAERQLIMVSATVPFSVVRAARSWGSDPLLVQAKKVVPIDTISPSEPVSLSRPSSGSAPNQSMPSQASVESLPPALKHYYCLARLQHKVDSLRRCINALDAKVVIVFMNNSKQLKDVVFKLEARGVDAAELHGDLGKLARSSTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGREGTVLTICEEPEVFVVKKMEKQLGVPIACCDFVEGKLLVAEEERALNTMRK*	573

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dod10g0587	572	PANTHER	DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL	20	548	-	-
	Dod10g0587	572	CDD	DEADc	124	356	-	-
	Dod10g0587	572	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	113	141	IPR014014	GO:0003724
	Dod10g0587	572	SMART	helicmild6	439	520	IPR001650	-
	Dod10g0587	572	Coils	Coil	406	426	-	-
	Dod10g0587	572	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	415	559	IPR001650	-
	Dod10g0587	572	Gene3D	-	397	553	IPR027417	-
	Dod10g0587	572	CDD	SF2_C_DEAD	400	529	-	-
	Dod10g0587	572	SMART	ultradead3	132	366	IPR014001	-
	Dod10g0587	572	Gene3D	-	63	357	IPR027417	-
	Dod10g0587	572	MobiDBLite	consensus disorder prediction	369	393	-	-
	Dod10g0587	572	Pfam	Helicase conserved C-terminal domain	417	520	IPR001650	-
	Dod10g0587	572	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	207	542	IPR027417	-
	Dod10g0587	572	MobiDBLite	consensus disorder prediction	57	105	-	-
	Dod10g0587	572	MobiDBLite	consensus disorder prediction	57	88	-	-
	Dod10g0587	572	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	144	355	IPR014001	-
	Dod10g0587	572	PANTHER	DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL	20	548	-	-
	Dod10g0587	572	Pfam	DEAD/DEAH box helicase	137	341	IPR011545	GO:0003676\|GO:0005524

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dod10g0587	Dod-Chr10	18908727	18911822	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dod10g0587	114	548	Eukaryotic Initiation Factors Gene Family	AT3G19760	22.989	7.12e-41	151

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Dod10g0587	-		-	aip:107613119	877.085