Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g0586 ATGGCCACTGCTACCGCCGCAGCGCCGCGACAGCTGTCGCAGAAGGAGCAGGACATCCAGATGATGCTCGCCGCCGAGGTTCACCTCGGAACCAAAAACTGCGACTTCCAGATGGATCGCTACGTCTTCAAACGCCGCAATGACGGTATTTATATAATTAACCTTGGCAAGACATGGGAGAAGCTCCAACTCGCAGCTAGGATAATTGTTGCCATTGAGAACCCTCAGGATATCATTGTTCAGTCTGCCAGGCCTTATGGTCAGAGAGCTGTACTTAAGTTTGCTCAATACACTGGCGCTAATGCTATTGCAGGAAGGCACACTCCTGGAACATTCACTAATCAGATGCAAACATCCTATAATGAGCCTCGCCTTCTCATTCTAACTGATCCAAGAACTGATCATCAGCCGATTAAGGAAGGTGCTCTTGGAAATATACCAGTTATTGCCTTTTGTGACACTGATTCACCAATGCGGTATGTTGACGTTGGTATTCCTGCCAATAATAAAGGGAAGCACAGTATCGGTTGCCTCTTTTGGCTTTTAGCAAGGATGGTTCTGCAGATGCGGGGCACTATTCGTCCAGGGCATAAGTGGGACATAATGGTGGATTTATTCTTCTATAGAGAACCTGAGGAGGCCAAGCAACAAGAGGAGGAAGAAGCTCCAGCTGCCCCAGAATATGCCATTGCAGACTTCAATCCTGCTGGTATTTCTAGTTTCCCTGCTGATGGTGAATGGCCTTCTGCAGTTGAACAACCCTGGCCTGAGGCAGTTCCACAACCTATCCCAGCAGCTCCTGCTAACTGGGCCCCAGAAGCTGGTGATTGGGGTGAGACTGTTTCAGCTCCACAAGTGTCTGTTTCAGCTCCGCAAGTGTCTGTTTCAGCTCCACAAGTTTCTGTGCCTGCACCTGGAACTGGAAATGTCATCGCAACAGGCTGGGAATAG 951 0.4921 MATATAAAPRQLSQKEQDIQMMLAAEVHLGTKNCDFQMDRYVFKRRNDGIYIINLGKTWEKLQLAARIIVAIENPQDIIVQSARPYGQRAVLKFAQYTGANAIAGRHTPGTFTNQMQTSYNEPRLLILTDPRTDHQPIKEGALGNIPVIAFCDTDSPMRYVDVGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDIMVDLFFYREPEEAKQQEEEEAPAAPEYAIADFNPAGISSFPADGEWPSAVEQPWPEAVPQPIPAAPANWAPEAGDWGETVSAPQVSVSAPQVSVSAPQVSVPAPGTGNVIATGWE* 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g0586 316 CDD RPS2 22 188 IPR001865 GO:0003735|GO:0005840|GO:0006412
Dod10g0586 316 PRINTS Ribosomal protein S2 signature 98 115 IPR001865 GO:0003735|GO:0005840|GO:0006412
Dod10g0586 316 PRINTS Ribosomal protein S2 signature 19 37 IPR001865 GO:0003735|GO:0005840|GO:0006412
Dod10g0586 316 PRINTS Ribosomal protein S2 signature 140 151 IPR001865 GO:0003735|GO:0005840|GO:0006412
Dod10g0586 316 PRINTS Ribosomal protein S2 signature 161 175 IPR001865 GO:0003735|GO:0005840|GO:0006412
Dod10g0586 316 PRINTS Ribosomal protein S2 signature 49 58 IPR001865 GO:0003735|GO:0005840|GO:0006412
Dod10g0586 316 PRINTS Ribosomal protein S2 signature 123 140 IPR001865 GO:0003735|GO:0005840|GO:0006412
Dod10g0586 316 PANTHER 40S RIBOSOMAL PROTEIN SA 9 231 IPR005707 GO:0003735|GO:0006412|GO:0015935
Dod10g0586 316 Hamap 40S ribosomal protein SA [rps-0]. 6 250 IPR027498 GO:0003735|GO:0006412|GO:0015935
Dod10g0586 316 ProSitePatterns Ribosomal protein S2 signature 1. 19 30 IPR018130 GO:0003735|GO:0005840|GO:0006412
Dod10g0586 316 ProSitePatterns Ribosomal protein S2 signature 2. 123 147 IPR018130 GO:0003735|GO:0005840|GO:0006412
Dod10g0586 316 SUPERFAMILY Ribosomal protein S2 14 204 IPR023591 -
Dod10g0586 316 Pfam Ribosomal protein S2 22 117 IPR001865 GO:0003735|GO:0005840|GO:0006412
Dod10g0586 316 PANTHER 40S RIBOSOMAL PROTEIN SA 9 231 - -
Dod10g0586 316 Gene3D - 18 224 - -
Dod10g0586 316 TIGRFAM uS2_euk_arch: ribosomal protein uS2 15 210 IPR005707 GO:0003735|GO:0006412|GO:0015935
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g0586 Dod-Chr10 18885621 18888358 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g0586 2 284 Cytoplasmic Ribosomal Protein Gene Family AT3G04770 71.930 2.94e-151 424
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g0586 K02998 - gmx:100786575 487.648