Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g0552 ATGGCGACGGAGATGGCGACGGCGACGGCGGCGGCGGAGGAAGGAGAACTTAAAACCTACTGGTGCCACGAATGCGACATGAGCGTTGCCCTCACCTCTTCCCCTTCCATCCCACTCCTCTGCCCTCACTGCCACACCCACTTCCTCGAACTCATGGACTCCCCAACCCAAAACGACGCCGTTCCACCACCACTCCACTCTCCCTCTTCTCTCTCCTTCTTCGACTCCCCCTTCCTCCACCGCTTCATCCACCGCCACAACGACGTCGTTCTCGAGGACCCCCTTTCCCTCCTTCTCCCCCCAAACCTTCCTTCCGAAACGACGCCGTCCAAGCCCTCCGCGGTACTCCCCGTAGTTACAGTCACATCCTCGTTGCTCCTTCAGCTCGACCCAAACGGCGTCGTTTCGTGCGCGGTCTGCAAGGACGAAATCGAGGTCGACGTGGAAGCGAAGCAGCTCCCTTGCAAGCACCTGTACCACTCCGATTGCATCACGCCATGGCTCGACCTTCACGATTCGTGCCCGCTCTGCCGGTTTCGGCTCACGGCGTCTGCGGCGGCGGAGGAGGAGGAGGAGGAAGAAGGAGATGACGGTGGTTTGAGATCGAGCGAGATCAGGAGGCAGCTGAGGGCGGCGATGGTGAGGCTGTCGGAGCTGATGGATGAAGAGGAGGACGATTTCTACGGGTTGAGGACTACTCTGAATCACATTGCCTCAAGGCATGGCTTGATTGGCTCCAATGATGGTTCTAGGGTTACTGAGGGTGAGGGTGGTGGTTCGGAGAGTGTTTCGAGGTTAGGTGGTGGTGAATGA 813 0.5916 MATEMATATAAAEEGELKTYWCHECDMSVALTSSPSIPLLCPHCHTHFLELMDSPTQNDAVPPPLHSPSSLSFFDSPFLHRFIHRHNDVVLEDPLSLLLPPNLPSETTPSKPSAVLPVVTVTSSLLLQLDPNGVVSCAVCKDEIEVDVEAKQLPCKHLYHSDCITPWLDLHDSCPLCRFRLTASAAAEEEEEEEGDDGGLRSSEIRRQLRAAMVRLSELMDEEEDDFYGLRTTLNHIASRHGLIGSNDGSRVTEGEGGGSESVSRLGGGE* 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g0552 270 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 128 195 IPR013083 -
Dod10g0552 270 Coils Coil 206 226 - -
Dod10g0552 270 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 9 204 - -
Dod10g0552 270 Pfam Ring finger domain 136 178 IPR001841 -
Dod10g0552 270 MobiDBLite consensus disorder prediction 241 270 - -
Dod10g0552 270 ProSiteProfiles Zinc finger RING-type profile. 137 178 IPR001841 -
Dod10g0552 270 SUPERFAMILY RING/U-box 136 183 - -
Dod10g0552 270 SMART ring_2 137 177 IPR001841 -
Dod10g0552 270 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 9 204 - -
Dod10g0552 270 Pfam zinc-ribbon 19 52 IPR039525 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g0552 Dod-Chr10 18042233 18045120 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g0552 14 269 C3H Transcription Factor Family AT3G60080 34.014 1.97e-31 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g0552 K11982 - gmx:100775530 216.083