Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g0534 ATGCCCACATGGGCTGTGTTCCCTAACATATCATTATGCTGTTCACTTCAGTTTCAGTCATTGCCAATTATCAGGAATTGTGGGCTCTCCCAAGAGGGTAGAGGAGGAGAGGAGGAAGAGAAGGAGAACATGGAGCTTGGTTTGAGCTTAGGAGACTCTTCAAGGCCTTTTGTTGGGTTCATGGAAAAGCCTCGTGAAGCTTCCAACCAACTTGGGTTAGGCTTTAATACCACCTTATCAATTGGTCCAGTCATCACTAGTACTAGACAAAGAGATCAACAAGAAGAAGAAGAAGCAAAGCCAAACAAGGCCAACAACCCTGCCCTGCATCCGCTTGATCTCCTTCCTCAACTCTCTCTCCCATGGCATCCTTCTGAAAATGGTAGTTTCTCAGGCGAGTTGGGGGGTTCTTCAAAAGGTTTGGACGTGAACGTGCTGCCGTTGGCGACGGCGGCGGCGGAAGATGAGGCGGAGGAAGGGGCGGCGCTGTCGTCATCCCCAAACAGTGCAGCATCATCTTTTCAGATGGATCTATGCATATTCAGAGGAGGCAGTGGCAGTGGTGGTGTTGGTGGTGGTGGTGGTGGAAGTTTCAGTGGTTCAGGTGGGAACTATTACAACTATGGTGGAAAAAGGGACTCAGATGGGGAGGCTTATGATCACCAAAGGGATTCTTCAAGAGCAAGTGATGAAGATGACAACGGTGGTGGTGGTAGTGGTGGCGGCAGCACCAGGAAGAAGCTCAGGCTCTCCAAGGAGCAATCTGCTTACCTTGAAGAGAGCTTCAAGGAGCACAACACCCTTAACCCTAAACAAAAGCTTGCTCTTGCTAAACAACTCAGTCTTCGCCCTCGCCAAGTAGAAGTCTGGTTTCAAAACAGAAGAGCAAGGACGAAGTTGAAGCAGACTGAGGTGGATTGTGAGTACTTGAAGAGGTGCTGTGAGACATTGACAGAAGAGAACAGGAGGCTTCACAAGGAGCTTCAAGAATTGAGGGCTTTGAAGACTTCAAACCCATTCTACATGCAGCTACCAGCAACTACCTTGACCATGTGCCCTTCTTGTGAGCGCGTTGCAACAAATTCTACCTCCAATTCCTCTTCAGCAGCTCCTTCTGGTGCCACCATCAATGCTAACACAGGAGCCATGATGATGGCTACTGCCACCACTGCCAAAAGCATTAATGACTCATCAACCCCCAAAGCCATTGGATTCCCGCTTGGGAAACCCAGGTTTCACCCCTTTGCTCACACCACCGCCCAACCGCGTCCACATCAGTCCACGGCATCTTGA 1293 0.4981 MPTWAVFPNISLCCSLQFQSLPIIRNCGLSQEGRGGEEEEKENMELGLSLGDSSRPFVGFMEKPREASNQLGLGFNTTLSIGPVITSTRQRDQQEEEEAKPNKANNPALHPLDLLPQLSLPWHPSENGSFSGELGGSSKGLDVNVLPLATAAAEDEAEEGAALSSSPNSAASSFQMDLCIFRGGSGSGGVGGGGGGSFSGSGGNYYNYGGKRDSDGEAYDHQRDSSRASDEDDNGGGGSGGGSTRKKLRLSKEQSAYLEESFKEHNTLNPKQKLALAKQLSLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLHKELQELRALKTSNPFYMQLPATTLTMCPSCERVATNSTSNSSSAAPSGATINANTGAMMMATATTAKSINDSSTPKAIGFPLGKPRFHPFAHTTAQPRPHQSTAS* 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g0534 430 PANTHER PROTEIN, PUTATIVE-RELATED 216 422 - -
Dod10g0534 430 ProSitePatterns 'Homeobox' domain signature. 276 299 IPR017970 GO:0000981|GO:0006355
Dod10g0534 430 PANTHER - 117 184 - -
Dod10g0534 430 SUPERFAMILY Homeodomain-like 227 302 IPR009057 -
Dod10g0534 430 SMART halz 301 344 IPR003106 GO:0006355|GO:0043565
Dod10g0534 430 MobiDBLite consensus disorder prediction 213 231 - -
Dod10g0534 430 Gene3D - 238 306 - -
Dod10g0534 430 Pfam Homeobox associated leucine zipper 301 335 IPR003106 GO:0006355|GO:0043565
Dod10g0534 430 Pfam Homeodomain 245 299 IPR001356 GO:0003677
Dod10g0534 430 ProSiteProfiles 'Homeobox' domain profile. 241 301 IPR001356 GO:0003677
Dod10g0534 430 PANTHER - 216 422 - -
Dod10g0534 430 PANTHER PROTEIN, PUTATIVE-RELATED 117 184 - -
Dod10g0534 430 MobiDBLite consensus disorder prediction 213 250 - -
Dod10g0534 430 CDD bZIP 294 333 - -
Dod10g0534 430 MobiDBLite consensus disorder prediction 395 430 - -
Dod10g0534 430 CDD homeodomain 245 302 IPR001356 GO:0003677
Dod10g0534 430 Coils Coil 314 337 - -
Dod10g0534 430 MobiDBLite consensus disorder prediction 82 111 - -
Dod10g0534 430 SMART HOX_1 243 305 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g0534 Dod-Chr10 17586180 17589790 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g0534 226 420 Homeobox Transcription Factor Family AT4G37790 56.122 3.78e-66 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Dod10g0534 Homeodomain 6.9e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g0534 K09338 - gmx:100778742 460.299