LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dod10g0497	ATGGGACTGAAGATGACGCACGTGAAACTAGCCTTGGTGTTTGTGGCTATTGCAGTAGCAACAAAGGTAGGAGCAGGTGCAGCTGCCCAAGCCCTGTTTGGCTGCGTTGATACTTGTGGGAATGTTTCAATTCCACACCCATTTGGCATAGGTGTATCATCAATTACCCGTAAGAACTGTTTCTTTCAGGAAGATTTAGAACTTGTTTGCGACAAATCCGTCTTATATCGAAAAGGTGGTACCGTCCCAATTTTGAACATATCCCTCGAAGGTCAAATAGACCTGTTAGCTTTGAATTCCTGGGTTTGTAGAGACGAATCCACCGGAAGCATCCGAACACAAGGTAATGAATCCAGACTCCATGTCAAAACTCCGGCATTTTCCATTTCTAAAGAGGATAACAAGTTCATAAGTGTAGGCTGTGACACTTATGGCTACCTCAATCATTTTCACAACAACGCTAGCTACTCTACCGGGTGCTTAACAAGATGTAACAGCATTGATGATATGCGCGCCATGAAAACCGATGGAAATTGTACAGGGATTGGGTGTTGTCAGGTTGATATTCCTCCAGCGATGAAGAATATCAGTGTCCGGGCATACAGTTTTTACAATTTCGACTACTCCCGGAAATTCAACAACTGCAGCTATTCCTTTATAGCCAAAAAAGGAAGCTACGATTTCTCTCTGAGTCATTTGGAGAAGCCGCCACCGCTTGAGAGGCTCCCCATGGTTCTTGATTGGACTGTTGGAAAGGAAGCATGTGATGCTTCCAAGGCTATGCCTAACTATGCATGCAGGAAAAACAGTCATTGTGAGGACTCAAGCACTGGACGTGGTTACCGATGCAGATGCAACCACGGCTTCGAGGGAAACCCATACCATCCGGATGGTTGCCGAGATATTGAGGAATGTAGGAGTAATACCCACGATTGCATAAGTGAAGATCATTGTCGCGAAACTGAAGGATCTTTCGAGTGTTTCTGCCCTGTTGGAAAAGGAGATGGAAAAAGGGAAGGTAAAGGATGTCACCGAGAAGATATAACAGTCAAGGTTACAATTGGTGTAGGCATTGGACTCGCAGTTCTGACTGTGGGGACTTCTTGGCTCTACTTGATCTACCAGAAAAGGAAGCTAATCAAACAGAAGGAGAATTTTTTCCGACAAAATGGGGGCATCCTTTTGCAACAAAAGCTTTCTACAAGAGAAGACCCCTCCCAGTCTGCTCAAATTTTCACGGAAGAACAGCTTATCAAGGCCACCAACAACTACGATGAGAGCTTAATCATTGGTAAAGGAGGTTTCGGTACTGTTTTCAAAGGATTTCTGTCGAATAATAGGATTGTTGCAGTCAAGAAGTCCAAATTAATTGATCAGAATCAAATTGAGCAATTCATTAATGAGGTGGTTGTTCTATCCCAAATAAACCATAGAAATGTGGTAAAACTCTTGGGTTGCTGTTTAGAGACTGAAGTTCCTTTGCTAGTTTATGAATTTGTTTGCAATGGTACCCTTTTTGACTACTTACACAATGAAGGAAAGACTAGTGTATCATGGAAAACCCGTCTACAAATTGCAGCTGAGGCTGCTGGAGCCCTATCATATCTACACTCATCAGCCTCGATACCCATTATCCATAGAGATGTAAAGAGTGCCAACATTCTCTTGGATGACACTTACACTGTCAAAGTGTCTGATTTTGGGACTTCGAGATTGATCCCAACTGATCAAGCTGAAGTAGCCACAATGGTGCAAGGAACTCTTGGTTATTTAGACCCAGAGTACCTGCAAACCAGCCAGCTTAATGAGAAAAGTGATGTGTATAGCTTTGGTGTTGTGCTTGTGGAATTGCTAACAGGGCAGAAAGCACTTTCATTCAAGAGGTCAGAAGAGAAAAGAAGTCTTGCCATGCACTTCATCTCGTGCTTGAAAAATGATCGCTTGATCGATGTTCTAGAAAGTGGCATTTTGAACAACGAAAACGAGAAGGAGATCAAGGAAGTTGCACTGCTTTCAGCAAGGTGCTTGAGACTTAAAGGTGAGAAAAGGCCTAGCATGAAAGAAGTTGCAATGGAGTTAGACGGAATAAGGCTTGTGGAGAAGCACCCATGGACCAATACAGATTTAAATTTGGAGGAGACTCAACACTTGCTTCATGACTCATCTAGCATTTCTGAACATGGCAACACTAGTAGTCATCAAAATACAGGATTGCACATTTGGAAGGTGATGCCAAGCTACTTCATGATAATATGCGGGACCAAAACCGAAGACAGATCTCAAAATGGCTCCATCTTACAATAA	2304	0.4293	MGLKMTHVKLALVFVAIAVATKVGAGAAAQALFGCVDTCGNVSIPHPFGIGVSSITRKNCFFQEDLELVCDKSVLYRKGGTVPILNISLEGQIDLLALNSWVCRDESTGSIRTQGNESRLHVKTPAFSISKEDNKFISVGCDTYGYLNHFHNNASYSTGCLTRCNSIDDMRAMKTDGNCTGIGCCQVDIPPAMKNISVRAYSFYNFDYSRKFNNCSYSFIAKKGSYDFSLSHLEKPPPLERLPMVLDWTVGKEACDASKAMPNYACRKNSHCEDSSTGRGYRCRCNHGFEGNPYHPDGCRDIEECRSNTHDCISEDHCRETEGSFECFCPVGKGDGKREGKGCHREDITVKVTIGVGIGLAVLTVGTSWLYLIYQKRKLIKQKENFFRQNGGILLQQKLSTREDPSQSAQIFTEEQLIKATNNYDESLIIGKGGFGTVFKGFLSNNRIVAVKKSKLIDQNQIEQFINEVVVLSQINHRNVVKLLGCCLETEVPLLVYEFVCNGTLFDYLHNEGKTSVSWKTRLQIAAEAAGALSYLHSSASIPIIHRDVKSANILLDDTYTVKVSDFGTSRLIPTDQAEVATMVQGTLGYLDPEYLQTSQLNEKSDVYSFGVVLVELLTGQKALSFKRSEEKRSLAMHFISCLKNDRLIDVLESGILNNENEKEIKEVALLSARCLRLKGEKRPSMKEVAMELDGIRLVEKHPWTNTDLNLEETQHLLHDSSSISEHGNTSSHQNTGLHIWKVMPSYFMIICGTKTEDRSQNGSILQ*	768

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dod10g0497	767	ProSiteProfiles	Prokaryotic membrane lipoprotein lipid attachment site profile.	1	35	-	-
	Dod10g0497	767	Pfam	Wall-associated receptor kinase galacturonan-binding	35	92	IPR025287	GO:0030247
	Dod10g0497	767	Gene3D	Transferase(Phosphotransferase) domain 1	500	716	-	-
	Dod10g0497	767	Pfam	Protein tyrosine and serine/threonine kinase	430	693	IPR001245	GO:0004672\|GO:0006468
	Dod10g0497	767	PANTHER	WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21	23	724	IPR045274	GO:0007166
	Dod10g0497	767	Gene3D	Phosphorylase Kinase; domain 1	392	499	-	-
	Dod10g0497	767	CDD	STKc_IRAK	430	696	-	-
	Dod10g0497	767	PANTHER	WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2	23	724	-	-
	Dod10g0497	767	ProSitePatterns	Protein kinases ATP-binding region signature.	430	453	IPR017441	GO:0005524
	Dod10g0497	767	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	544	556	IPR008271	GO:0004672\|GO:0006468
	Dod10g0497	767	Gene3D	Laminin	253	343	-	-
	Dod10g0497	767	SMART	serkin_6	424	705	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dod10g0497	767	ProSiteProfiles	Protein kinase domain profile.	424	705	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dod10g0497	767	SUPERFAMILY	Protein kinase-like (PK-like)	405	693	IPR011009	-
	Dod10g0497	767	Pfam	Calcium-binding EGF domain	301	333	IPR001881	GO:0005509
	Dod10g0497	767	SUPERFAMILY	EGF/Laminin	301	333	-	-
	Dod10g0497	767	SMART	egf_5	254	300	IPR000742	-
	Dod10g0497	767	SMART	egf_5	304	344	IPR000742	-
	Dod10g0497	767	ProSiteProfiles	EGF-like domain profile.	301	344	IPR000742	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dod10g0497	Dod-Chr10	16698420	16705425	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dod10g0497	3	732	Receptor kinase-like Gene Family	AT1G21230	43.641	0.0	579

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_WAK	Dod10g0497		PK_Tyr_Ser-Thr	6.4e-52	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Dod10g0497	-		-	gmx:100819535	956.436