Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g0487 ATGGCTGCTACTCTGCAGTACTCTTCTCTGCTTTCACCACCCAAACCCAAGCTCCTATCCCTCACAACCTCCCCATCATCATCGAGTTCCACTCTTGGCTTGAAACCCGTGCTCAAGTTGGTGCCTTCCCTCGTAGTTATTGGAGCTCCCACTCCCAGACACAGACACAGACACTGTCTTCGGAGACCCTTTGCGGTGGCTGAAGAAGCCTCCGCGGTTGCTTCGGCGGACCCCAAGTCCGAGGCTGCCAGGAGGCTCTACGTCGGCAACATTCCCCGCACTGTCACCAACGACGAGCTCAAGAAGATTGTTGAAGAGCATGGTGCTGTTGAGAGAGCTGAGGTTATGTATGATAAATACTCTGGAAGGAGTCGACGTTTTGCATTTGTTACAATGACAAGCATTGAGGATGCAAATGTAGTAGTTGAGAAATTAAATGGCACTGAAATTGGAGGACGTGAGGTCAAAGTAAATATAACAGAAAAACCTTTGCCAACAGCAGATTTGCCTTTACTCCATGCTGAGGAATCCAATTTTATTGACAGCCCCCACAAGGTTTATGTTGGAAATCTGGCCAAGACAGTAACAACAGATAAACTTAAAAACTTTTTCTCTGAGAAGGGACAAGTTCTTAGTGCCAAGGTCTCACGGGTTCCTGGCACCTCAAAATCAAGTGGGTTTGGTTTTGTTACTTTTTCTTCAGGAGAGGATGTAGAAGTTGCAATCTCATCTTTCAACAATGCTTTGCTAGAAGGGCAAAAGATTCGTGTGAATAAGGCATAG 783 0.4649 MAATLQYSSLLSPPKPKLLSLTTSPSSSSSTLGLKPVLKLVPSLVVIGAPTPRHRHRHCLRRPFAVAEEASAVASADPKSEAARRLYVGNIPRTVTNDELKKIVEEHGAVERAEVMYDKYSGRSRRFAFVTMTSIEDANVVVEKLNGTEIGGREVKVNITEKPLPTADLPLLHAEESNFIDSPHKVYVGNLAKTVTTDKLKNFFSEKGQVLSAKVSRVPGTSKSSGFGFVTFSSGEDVEVAISSFNNALLEGQKIRVNKA* 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g0487 260 SUPERFAMILY RNA-binding domain, RBD 180 260 IPR035979 GO:0003676
Dod10g0487 260 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 86 156 IPR000504 GO:0003723
Dod10g0487 260 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 186 256 IPR000504 GO:0003723
Dod10g0487 260 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 84 162 IPR000504 GO:0003723
Dod10g0487 260 SUPERFAMILY RNA-binding domain, RBD 77 163 IPR035979 GO:0003676
Dod10g0487 260 Gene3D - 60 167 IPR012677 -
Dod10g0487 260 Gene3D - 173 260 IPR012677 -
Dod10g0487 260 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 184 260 IPR000504 GO:0003723
Dod10g0487 260 PANTHER 30S RIBOSOMAL PROTEIN 2, CHLOROPLASTIC 56 260 - -
Dod10g0487 260 PANTHER OS02G0815200 PROTEIN 56 260 - -
Dod10g0487 260 SMART rrm1_1 85 158 IPR000504 GO:0003723
Dod10g0487 260 SMART rrm1_1 185 258 IPR000504 GO:0003723
Dod10g0487 260 CDD RRM_HP0827_like 85 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g0487 Dod-Chr10 16454811 16457997 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g0487 86 260 Eukaryotic Initiation Factors Gene Family AT2G23350 31.461 9.42e-17 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g0487 K13126 - sind:105168752 314.309