Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g0477 ATGAGTGTCATGTATAGTCCTGCTCTAAAGTACTCAGGTGGGGTGCTAATGAAAAGCCAAGAAATGGATTCAAGCATTGGACATCAACATCAATTACAACACTGTCACCAGCAAAATTCTGGTTTATTGAGGTACCGTTCTTCTCCAAGCTCATTCCTGGAAAGCCTTGTTGACAACAACAACAACAGCAACAACAACACAGGTGGTGGTTGTGTCAATGAGGTAGCTTTCAGAAATGAGGATGATCCTCGGTGTTATGTTCCATCCACAAGCTCAGAAATGGAGACCATGTTGTCAAAGCTGATATCATCAAACAATGGATGGAGCAATCCTGAACATGTGCAAGAAGAGTTTGGTGGCAAGCATGTGAAGCAGGAAGAAGAAGGGAAACAGCAGAATGGTTACTCTTACGGGTCACAGTTGATTTACCAGTCTCAGCAGATTCAAGGCTTGACAAATGGTTCTTCAGGTGATGCTGCCAATGGCTTTGATGGCTCTTTTGGTGTGGTGAACTCCATCACTTCAGGCAACTCCTTTCAATCTAAAATGGGTGTTAGGAGTTGCTCCAATCTCATCAGGCAAAAGAGCTCCCCACCTGGTTTTTTTTTCTCCAATGAAAATGGTCTTGCAGCATTGAGAGAGGTAGGGAGCTTTGGAGCCAGTGATGTCTCAAATGGACAAGCTACTGCATCAACTAATGCGTTGAATGGAGCTCTTTCGTTCTCATCTAGGCCATCCTCTTGCTTGAAACGGCTGCCACAGATTGCCGAAAATGAAAACGAAAGCATAGAGAGAAACGAAAGCATAGAGAGAAATAGTGACCAGAGTAGAAACCAGGTAAATGACAATGGCAGCACTAAATGTTATGTCCCTAGCTTCACCAATGAATTCTGGGACGGTTCTGCATTCAATTCCCAAAAAACAGCAAGTGAAGATGAAATCATGTTTTCTACTTCAAATGCCTTGGAGTCTCAGGATTCAGACTTTTGCGCTCAAAATCTTGGTTTGACTCATCATTTGAGTCTGCCTAGTTCTTCTACTAAGATGGCATCCATTGAGAAGTTTCTTCAACTTCAAGGAACTGTTCCTTGTAAAGTTCGAGCCAAGAGAGGCTTCGCCACTCACCCTAGAAGCATTGCAGAGAGGGAAAGAAGAACACGGATTAGTGAACGAATCAAGAAATTGCAAGGCCTTTTCCCAAAATCAGACAAGCAAACAAGCACAGCTGATATGTTGGATTTAGCAGTTGAGCACATTAAAGACCTGCAGGATCAGATTAAGATACTCACAGATGTCAGGGCAAGGTGCAAATGTACAAGTAATCAGAACCAATACTCTTGA 1341 0.4295 MSVMYSPALKYSGGVLMKSQEMDSSIGHQHQLQHCHQQNSGLLRYRSSPSSFLESLVDNNNNSNNNTGGGCVNEVAFRNEDDPRCYVPSTSSEMETMLSKLISSNNGWSNPEHVQEEFGGKHVKQEEEGKQQNGYSYGSQLIYQSQQIQGLTNGSSGDAANGFDGSFGVVNSITSGNSFQSKMGVRSCSNLIRQKSSPPGFFFSNENGLAALREVGSFGASDVSNGQATASTNALNGALSFSSRPSSCLKRLPQIAENENESIERNESIERNSDQSRNQVNDNGSTKCYVPSFTNEFWDGSAFNSQKTASEDEIMFSTSNALESQDSDFCAQNLGLTHHLSLPSSSTKMASIEKFLQLQGTVPCKVRAKRGFATHPRSIAERERRTRISERIKKLQGLFPKSDKQTSTADMLDLAVEHIKDLQDQIKILTDVRARCKCTSNQNQYS* 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g0477 446 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 374 438 IPR036638 GO:0046983
Dod10g0477 446 MobiDBLite consensus disorder prediction 259 285 - -
Dod10g0477 446 Gene3D - 373 444 IPR036638 GO:0046983
Dod10g0477 446 CDD bHLH_AtbHLH_like 377 429 IPR045239 -
Dod10g0477 446 Pfam Helix-loop-helix DNA-binding domain 377 423 IPR011598 GO:0046983
Dod10g0477 446 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 372 422 IPR011598 GO:0046983
Dod10g0477 446 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 31 442 - -
Dod10g0477 446 SMART finulus 378 428 IPR011598 GO:0046983
Dod10g0477 446 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 31 442 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g0477 Dod-Chr10 16186306 16189801 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g0477 22 440 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51140 31.724 3.24e-47 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dod10g0477 HLH 8.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g0477 - - gmx:100812802 571.622