Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g0467 ATGGGAAGAAAAAACGGGGGAAGGTCACTGCAAGAAATTCTCCGCCGCCGATTGCAGTCGTGCAAGACCAGCCACTCCACCGTCGACGAAATCGTCAATCACCTCCGCTCCACATACCCCGATTACCAACGCACCAAGCATCAAACACTCACCCGCTTCGTTCACCAGGCTCTCCAGTCACGTGCCAACCACGTGCCCAAGAGCACTTCCACCACGCGCAAGCACCACAATGACGACGGCGACGACGACGAAGAAGAAGATGAAGAAGAGGATCGAAGCGCCTCTCGCAAGAGACGGAAGAGAGTGGACGAGAGCGAAGAGAGGTTGCAGAAGATGGAGGCTTCACACCTCCAAAGAAGAAGAGTGAAGCTGAGCGGTGAGGCTTTGGGTTCTCCAACGACGTCGTCTGCTTCGAGCTCGAGCGCGTCGGAGGAGAGTGTTTCGACGTCGGAGGACGCGGTTTACGGGGAGAACTTCGAGCCGGCGATCGATTTGATGAAGACGATGCTGCGGAATTCGTATACTTCTGGAACAAAGGACAATTCAAAGAAGAAGGAACAGGTTGTGGAGGAAAACAACGTTGAAGTGGAGGTTGCGAATAGTAGTAAGGCCACTAACGTTATAGGTGTTGTGAATGTAGGAGAGGGGAAATCGGCGAGTAATAAGTTGAATTCGAAGGGTTCAGTTTCGAATGGTAACGGTGGTGGCGGTGAGGTGAAGAGGGAGGAGGGGCCGAGGTTCAGTGATTTGGGTGGGATGAGGGATGTTTTGGAGGAGCTGAAGATGGATGTGATTGTGCCGTTGTTCCATCCACAGCTCCCGAGGCATTTGGGAGTGACGCCCATGGCTGGGATCTTGCTGCATGGGCCACCAGGGTGTGGGAAGACCAAGCTCGCTCATGCTATTGCCAATGAAACTGGCCTTCCATTCTATCAGATTTCCGCAACTGAGCTTGTTTCTGGAGTCTCAGGTGCATCCGAAGAGAATATTAGAGAGCTTTTCTCTAAGGCATACAGGACTGCTCCATCGATTGTCTTTATTGATGAGATTGATGCAATTGCTTCAAAAAGGGAGAATTTACAGCGAGAGATGGAGAAAAGAATCGTGACGCAGTTAATGACTTGCATGGATCAATCAACCAGGCTTATGCAACCTGCTGATGATTCAGGAAATTCTGATGTTCGTCCTGGCTATGTTCTTGTAATTGGAGCTACGAATAGACCCGATGCTCTTGACCCTGCCTTGAGAAGGCCTGGGCGGTTTGATCGTGAGATTGTTGTCGGTATTCCTGATGAATCTGCAAGGGAGGAGATTCTTACTGTGCTTACCTGCAACCTTAGACTTGAGGGTTCATTTGATCTTAAAAAAATAGCCAGGTCTACGCCAGGATTTGTTGGTGCTGATTTGACAGCTCTGGCTAACAAGGCTGGTAATCTTGCAATAAAGAGAATTATTGATGAAAGGAGATGTAAACTATCTCAAGATGGGCAAAATGAAGAATGGTGGAGGGAACCTTGGTTGCCTGAAGAGATTGATAAGCTTGCCATCAAAATGTCTGATTTTGAGGAAGCAGTCAAAATGGTGCAACCTTCATCAAGAAGAGAAGGGTTCTCTACCATTCCTGATGTAAAATGGGAAGATGTTGGTGGGCTTGATCTTTTAAGACAGGAGTTTGAACACAATATATTGGGTCGTATAAAATATCCCGAGATGTATGAGAGATTTGGGGTGGATCTTGAGACAGGATTTTTGCTTTACGGACCTCCAGGTTGTGGTAAAACACTCATTGCCAAAGCTCTTGCCAACGAGGCAGGAGCTAATTTCATTCATATTAAGGGGCCTGAACTTTTAAATAAATATGTCGGAGAAAGTGAGCTGGCAGTTCGAGCATTGTTTAGTCGTGCAAGGACATGTTCGCCTTGTATACTCTTTTTTGATGAGGTGGATGCTTTGACAACTAACCGTGGTAAAGAAGGTGGATGGGTTGTTGAACGACTATTGGACCAGTTACTTGTCGAGTTAGATGGTTCAGAGCAGCGGCGAGGTGTTTTTGTCATTGGTGCTACTAATAGGCCTGACGTGATGGATCCTGCTCTCCTACGTCCTGGTAGGTTTGGTAAACCTCTTTTTGTTCCTCTGCCAAGTGCTGAAGAGCGAGTTTTGATATTGAAAGCACTTGCAAGGAAAAAGCCTGTTGATGCCAGTGTGGACTTAAGTACCATAGCGAGAATGGAAGCTTGTGAAAATCTAAGTGGCGCTGACCTTGCTGCATTGATGAATGAAGCAGCAATGACTGCTCTTCGTCAGGCACTATCATCGTCAGGTGGGACATGGACGATCAAGATGAGTCATTTTGAGGTAGCTCTGAGTAAAGTTTCGCCATCTGTGTCAGACAAGCAAAATCGATTCTATCAGCATTTGTCAGAGAGCTTTAATGGCAAGATGCTAAGGTAG 2454 0.4735 MGRKNGGRSLQEILRRRLQSCKTSHSTVDEIVNHLRSTYPDYQRTKHQTLTRFVHQALQSRANHVPKSTSTTRKHHNDDGDDDEEEDEEEDRSASRKRRKRVDESEERLQKMEASHLQRRRVKLSGEALGSPTTSSASSSSASEESVSTSEDAVYGENFEPAIDLMKTMLRNSYTSGTKDNSKKKEQVVEENNVEVEVANSSKATNVIGVVNVGEGKSASNKLNSKGSVSNGNGGGGEVKREEGPRFSDLGGMRDVLEELKMDVIVPLFHPQLPRHLGVTPMAGILLHGPPGCGKTKLAHAIANETGLPFYQISATELVSGVSGASEENIRELFSKAYRTAPSIVFIDEIDAIASKRENLQREMEKRIVTQLMTCMDQSTRLMQPADDSGNSDVRPGYVLVIGATNRPDALDPALRRPGRFDREIVVGIPDESAREEILTVLTCNLRLEGSFDLKKIARSTPGFVGADLTALANKAGNLAIKRIIDERRCKLSQDGQNEEWWREPWLPEEIDKLAIKMSDFEEAVKMVQPSSRREGFSTIPDVKWEDVGGLDLLRQEFEHNILGRIKYPEMYERFGVDLETGFLLYGPPGCGKTLIAKALANEAGANFIHIKGPELLNKYVGESELAVRALFSRARTCSPCILFFDEVDALTTNRGKEGGWVVERLLDQLLVELDGSEQRRGVFVIGATNRPDVMDPALLRPGRFGKPLFVPLPSAEERVLILKALARKKPVDASVDLSTIARMEACENLSGADLAALMNEAAMTALRQALSSSGGTWTIKMSHFEVALSKVSPSVSDKQNRFYQHLSESFNGKMLR* 818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g0467 817 Pfam AAA+ lid domain 735 786 IPR041569 -
Dod10g0467 817 Pfam AAA+ lid domain 452 487 IPR041569 -
Dod10g0467 817 PANTHER AAA-FAMILY ATPASE 30 811 - -
Dod10g0467 817 Gene3D - 430 535 - -
Dod10g0467 817 SMART AAA_5 281 431 IPR003593 -
Dod10g0467 817 SMART AAA_5 579 715 IPR003593 -
Dod10g0467 817 CDD AAA 281 428 - -
Dod10g0467 817 Pfam ATPase family associated with various cellular activities (AAA) 285 427 IPR003959 GO:0005524|GO:0016887
Dod10g0467 817 Pfam ATPase family associated with various cellular activities (AAA) 584 712 IPR003959 GO:0005524|GO:0016887
Dod10g0467 817 Gene3D - 714 790 - -
Dod10g0467 817 ProSitePatterns AAA-protein family signature. 683 701 IPR003960 GO:0005524|GO:0016887
Dod10g0467 817 PANTHER NUCLEAR VALOSIN-CONTAINING PROTEIN-LIKE 30 811 - -
Dod10g0467 817 Coils Coil 95 115 - -
Dod10g0467 817 CDD AAA 582 713 - -
Dod10g0467 817 Gene3D - 237 429 IPR027417 -
Dod10g0467 817 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 541 809 IPR027417 -
Dod10g0467 817 MobiDBLite consensus disorder prediction 219 247 - -
Dod10g0467 817 MobiDBLite consensus disorder prediction 61 155 - -
Dod10g0467 817 ProSitePatterns AAA-protein family signature. 399 417 IPR003960 GO:0005524|GO:0016887
Dod10g0467 817 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 246 534 IPR027417 -
Dod10g0467 817 MobiDBLite consensus disorder prediction 128 153 - -
Dod10g0467 817 Gene3D - 541 804 IPR027417 -
Dod10g0467 817 MobiDBLite consensus disorder prediction 91 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g0467 Dod-Chr10 15895813 15902741 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g0467 514 811 Calmodulin-binding Proteins AT3G56690 43.667 6.33e-69 244
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g0467 K14571 - gmx:100809594 1099.73