Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g0460 ATGTCCAAGAGGGTTCTCTGTAAATTCTTTGCTCATGGAGCATGTCTGAAAGGGGAACATTGTGAATTTTCTCATGACTGGAAAGATCCTCCCAATAATATATGCACATTTTATCAGAAAGGAGTATGCGCTTATGGTAGTCGCTGCAGATATGATCATGTGAAAGTTTCTCGAGTACAATCCTCCACTGCATCGTCTTCAGAATCTGAACCCCAGCCCCATGTATCTGGTAATCCCGGAATTGCATCAAACAGTATTTCTACAACTTCAGAGTTTTCCCCTTCCATAAGTCCTTCCCTTCTTCCCAGTAAACCTGCTTGGAGTCAAGACTCTGAATATCATGAATTTTTAGAGCAAGATAAGGTTGGTCAATTGAGAATTACTTCACCAGCTGAACTTTCAATCTGTTCATTTGCTGCTGCTGGCAACTGTCCACGAGGGGAAAAATGTCCTCATATTCATGGAGATCTCTGTCCTACCTGTGGAAAACACTGCTTACATCCTTTCCGATCTGAGGAAAGGGAAGAACATAAGAAGAGTTGTGAAAACAAGCAAAAGCATCTTGATGCATTGAAAGGGAGTCAAGAAATTGAATGCAGTGTATGCCTGGAGCGTGTTCTTTCGAAGCCTACAGCAGCCGAACGTAAGTTTGGGCTGTTATCTGAATGTGATCATCCATTCTGCATTTCCTGTATTAGGAATTGGCGAAGTAGTAACCCAACAATGGGGATGGATGTCAATAGTACGTTGAGGGCATGTCCTATCTGTCGCAAGCTGTCTTACTTTGTCATTCCAAGTGTCATTTGGTATTCGACAAATGAAGAAAAAATGGAAATCGTTGATAGCTACAAGGCAAAGCTCAAGTCAATTGATTGCAAGCATTTTGACTTTGGGGATGGGAACTGTCCTTTTGGAACTAGTTGTTTCTACAAGCATGCATATCGAGATGGCCGTCTTGAGGAGGTAGATCTGAGACATCTTGGGGCAGCAGATGGCAATACTGTGATTGCTAAAGACGTCAGGTTGTCGGATTTCCTTGCTGACATGCACTTAAGATGA 1059 0.4249 MSKRVLCKFFAHGACLKGEHCEFSHDWKDPPNNICTFYQKGVCAYGSRCRYDHVKVSRVQSSTASSSESEPQPHVSGNPGIASNSISTTSEFSPSISPSLLPSKPAWSQDSEYHEFLEQDKVGQLRITSPAELSICSFAAAGNCPRGEKCPHIHGDLCPTCGKHCLHPFRSEEREEHKKSCENKQKHLDALKGSQEIECSVCLERVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSNPTMGMDVNSTLRACPICRKLSYFVIPSVIWYSTNEEKMEIVDSYKAKLKSIDCKHFDFGDGNCPFGTSCFYKHAYRDGRLEEVDLRHLGAADGNTVIAKDVRLSDFLADMHLR* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g0460 352 CDD RING-HC_MKRN 199 257 - -
Dod10g0460 352 Pfam RNA-binding, Nab2-type zinc finger 291 313 - -
Dod10g0460 352 Pfam RNA-binding, Nab2-type zinc finger 135 154 - -
Dod10g0460 352 SUPERFAMILY CCCH zinc finger 32 53 IPR036855 GO:0046872
Dod10g0460 352 ProSiteProfiles Zinc finger RING-type profile. 199 257 IPR001841 -
Dod10g0460 352 Gene3D - 1 31 - -
Dod10g0460 352 Pfam Zinc finger, C3HC4 type (RING finger) 199 256 IPR018957 GO:0046872
Dod10g0460 352 ProSitePatterns Zinc finger RING-type signature. 223 232 IPR017907 -
Dod10g0460 352 SUPERFAMILY RING/U-box 191 263 - -
Dod10g0460 352 SMART ring_2 199 256 IPR001841 -
Dod10g0460 352 ProSiteProfiles Zinc finger C3H1-type profile. 29 56 IPR000571 GO:0046872
Dod10g0460 352 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 185 293 IPR013083 -
Dod10g0460 352 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 69-LIKE 1 352 - -
Dod10g0460 352 SMART c3hfinal6 1 27 IPR000571 GO:0046872
Dod10g0460 352 SMART c3hfinal6 131 156 IPR000571 GO:0046872
Dod10g0460 352 SMART c3hfinal6 286 314 IPR000571 GO:0046872
Dod10g0460 352 SMART c3hfinal6 30 55 IPR000571 GO:0046872
Dod10g0460 352 PANTHER MAKORIN-RELATED 1 352 IPR045072 -
Dod10g0460 352 SUPERFAMILY CCCH zinc finger 3 26 IPR036855 GO:0046872
Dod10g0460 352 Gene3D - 32 158 - -
Dod10g0460 352 ProSiteProfiles Zinc finger C3H1-type profile. 1 28 IPR000571 GO:0046872
Dod10g0460 352 Pfam CCCH-type zinc finger 34 53 IPR041367 -
Dod10g0460 352 Pfam CCCH-type zinc finger 6 26 IPR041367 -
Dod10g0460 352 MobiDBLite consensus disorder prediction 61 104 - -
Dod10g0460 352 ProSiteProfiles Zinc finger C3H1-type profile. 286 315 IPR000571 GO:0046872
Dod10g0460 352 ProSiteProfiles Zinc finger C3H1-type profile. 130 157 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g0460 Dod-Chr10 15433816 15450316 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Dod10g0460 zf-C3HC4 3.5e-07 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g0460 K15687 - gmx:100787817 605.905