Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g0459 ATGTCCACCCGGATTTGCAAGTTCTATGCCCGTGGTGCTTGTTTGAAAGGGGAACAATGTGATTTTTCTCATGAGAGAAAAGATTCTGCAGTTGATGCACCTGGACAGCAGATTTGCACATTCTATCAGAAAGGGCTCTGTGCTTATGGCAGTCGATGCAGATATAAGCATGTCAAAGCTTCTCGAGCGTCATCTTCAACAAATGGACATCAGTCTCTTGTTTCAGATTCTGTTGCAGCTCATACTACTCAAGGAGCATCATCAAGCTGGGTTCCAAAGGCTACAAAGTTGTCTCCATCAGACAAGTATGTGAGGAGTTCACAACGTAAGCATCAGGATTATCTGGGGAATGGTGATGTTGGTGAATCCAGTACTAGTAGTGCTACCCCATCTGAGCAACTTTTTTGCACATTTGCTGCTGCCAACTGCCCCTTAGGAGATAAATGTTCTCGTGTTCATGGCAATCGATGTTTATACTGTAGAAAATACTGCTTGCATCCTACTGATCGAAGGGTAAAAGAAAATCATTTGAGGACTTGCGAGAAAAAGGAAAAATACCTTCAGCTTTTGAAAGATAGTCAAGAAATAGAATGCAATGTTTGTCTTGAGCGTGTTCTTTCAAAACCTAAACCATCTGAATGTAAGTTTGGGTTGCTTCCTGAATGCGACCATGCTTTCTGTATATCCTGTATCCGCAACTGGCGTAGTAGTGCCCCAACCTCTGGAATGGACATCAATAATAATACTAATACAGTGAGAACATGCCCTGTGTGCCGCAAATTATCTTATTTTGTCATTCCAAGTGGTATATGGTATTCTACAAAGGAAGAGAAGCAGGAAATTATTGACAACTACAAGGCTAACTGCAAGTTGATTGATTGCAAGCATTTTAACTTTGGAGATGGGAACTGCCCATTTGGGACCAGTTGTTTCTACAAGCATACTGTTAAGCCTGGTTCATACACGTGGATTCATAGAAGGCCACCACCTAAACGTAGACAGAACAATTTTGATATGTATGACGTGTTGGATATGCTTGGTGAAGTTGATTTATCTGGTGGAGAATTATATTCAATTATGAGGGACTCAGAGTTGTTCGATGAAATGGATCCATATGAAATGATGACAATCTCAGATATACTGGGCAATGGATCAGGTCCTTGTCCTTTTGATTCTGATGATGAAGATGATGAACACTTGGAAATTCTTCAGATGGCTTCCTTGTCAGAGGCATTGGTTTCCGGTGTTGATGACTTTGGCCCTCAAGACTTTGACAATGAAGAATTGAACCCTATGGAGGCGGCATTTTTGTCAATGATGATGCATTCTAATATGGATGAAGAAGAAGAAGAATACAGTGATGAAGACTACTAG 1374 0.4098 MSTRICKFYARGACLKGEQCDFSHERKDSAVDAPGQQICTFYQKGLCAYGSRCRYKHVKASRASSSTNGHQSLVSDSVAAHTTQGASSSWVPKATKLSPSDKYVRSSQRKHQDYLGNGDVGESSTSSATPSEQLFCTFAAANCPLGDKCSRVHGNRCLYCRKYCLHPTDRRVKENHLRTCEKKEKYLQLLKDSQEIECNVCLERVLSKPKPSECKFGLLPECDHAFCISCIRNWRSSAPTSGMDINNNTNTVRTCPVCRKLSYFVIPSGIWYSTKEEKQEIIDNYKANCKLIDCKHFNFGDGNCPFGTSCFYKHTVKPGSYTWIHRRPPPKRRQNNFDMYDVLDMLGEVDLSGGELYSIMRDSELFDEMDPYEMMTISDILGNGSGPCPFDSDDEDDEHLEILQMASLSEALVSGVDDFGPQDFDNEELNPMEAAFLSMMMHSNMDEEEEEYSDEDY* 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g0459 457 ProSiteProfiles Zinc finger RING-type profile. 198 259 IPR001841 -
Dod10g0459 457 SUPERFAMILY CCCH zinc finger 3 25 IPR036855 GO:0046872
Dod10g0459 457 MobiDBLite consensus disorder prediction 100 126 - -
Dod10g0459 457 Pfam Zinc finger, C3HC4 type (RING finger) 198 258 IPR018957 GO:0046872
Dod10g0459 457 ProSitePatterns Zinc finger RING-type signature. 222 231 IPR017907 -
Dod10g0459 457 Gene3D - 34 156 - -
Dod10g0459 457 SUPERFAMILY CCCH zinc finger 36 57 IPR036855 GO:0046872
Dod10g0459 457 SMART c3hfinal6 2 26 IPR000571 GO:0046872
Dod10g0459 457 SMART c3hfinal6 33 59 IPR000571 GO:0046872
Dod10g0459 457 SMART c3hfinal6 131 155 IPR000571 GO:0046872
Dod10g0459 457 SMART c3hfinal6 288 316 IPR000571 GO:0046872
Dod10g0459 457 PANTHER MAKORIN-RELATED 1 457 IPR045072 -
Dod10g0459 457 SMART ring_2 198 258 IPR001841 -
Dod10g0459 457 CDD RING-HC_MKRN 198 259 - -
Dod10g0459 457 Pfam CCCH-type zinc finger 38 57 IPR041367 -
Dod10g0459 457 Pfam RNA-binding, Nab2-type zinc finger 5 24 - -
Dod10g0459 457 Pfam RNA-binding, Nab2-type zinc finger 136 154 - -
Dod10g0459 457 Pfam RNA-binding, Nab2-type zinc finger 293 314 - -
Dod10g0459 457 MobiDBLite consensus disorder prediction 110 126 - -
Dod10g0459 457 ProSiteProfiles Zinc finger C3H1-type profile. 288 317 IPR000571 GO:0046872
Dod10g0459 457 ProSiteProfiles Zinc finger C3H1-type profile. 33 60 IPR000571 GO:0046872
Dod10g0459 457 PANTHER MAKORIN RING-ZINC-FINGER PROTEIN 1 457 - -
Dod10g0459 457 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 173 295 IPR013083 -
Dod10g0459 457 ProSiteProfiles Zinc finger C3H1-type profile. 1 27 IPR000571 GO:0046872
Dod10g0459 457 Gene3D - 1 33 - -
Dod10g0459 457 SUPERFAMILY RING/U-box 190 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g0459 Dod-Chr10 15413795 15419680 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Dod10g0459 zf-C3HC4 1.3e-06 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g0459 K15687 - gmx:100788886 699.123