Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g0458 ATGACAGACCCTCAGTCCAATTTATGCGCTGGAAGATTCAACTTCATGCCCCTCCATCCTCACTACTACTCTTCTCTTGCTCCTCAATCAAACCTCTTCTCATCCTACCCTCCTCTTGCTTACCAAAACAGCAGATTCTCCCTTCAATTTGAAGCCTCTTCCTCTGCAGCTGCAGCAGGTCCTCCTTCCCCTCCTCTCAGAGAGGCCCTTCCTCTCATAAACAGTATGAGCCTCAGAAACCAGCACCAAAATGAACCCTCAAACGGTGCTGGTGCTGTGGAAGAGGAAGAGGACAAGAGAAAAGACAAAGATGAGAATCTTTTGACTAGTCCTACTGAAGGTGTTGATGAAACTGTGACCGTAGCACTGCACATAGGGCTTCCTAGCATGTCTACTTCTGATCTGGGGTCAAGAAAGATCTCAACTTCTGCACAAGTAATGGGTGAAAAAGAGGAAGTGGGTGTGATTTCTGAGCACCCTTTGGATAGATTGAACAAGGCCCAGTATTGGATTCCCACACCTTCTCAGATTCTAATTGGCCCTACTCAGTTCTCCTGTCCTGTGTGCTCTAAGTCTTTCAACAGATACAATAATCTTCAGATGCATATGTGGGGACACGGATCTCAATACCGAAAGGGGCCTGATTCTCTGAAAGGAACGCAACCAACTGCTATGCTAAGGCTTCCATGCTTTTGTTGTGCACCAGGTTGCAAGCACAACATTGACCACCCGAGATCAAGGCCTCTCAAGGATTTCAGGACTCTTCAAACACATTATAAGAGAAAGCATGGCATAAAACCTTACATGTGCAGAAAGTGTGGCAAAGCATTTGCAGTCAAAGGTGATTGGCGGACACATGAAAAGAACTGTGGCAAAATTTGGTATTGTTTATGTGGGTCTGATTTCAAACATAAAAGATCTTTAAAAGACCACATAAAGGCCTTTGGCCATGGCCACGGAGCTTTTGGCATTGATTGCATGCAAGAGGAAGATGAAGCAGCCTCCGAAATTGAACATGATGGGGATGGCTCAATGTAA 1038 0.4547 MTDPQSNLCAGRFNFMPLHPHYYSSLAPQSNLFSSYPPLAYQNSRFSLQFEASSSAAAAGPPSPPLREALPLINSMSLRNQHQNEPSNGAGAVEEEEDKRKDKDENLLTSPTEGVDETVTVALHIGLPSMSTSDLGSRKISTSAQVMGEKEEVGVISEHPLDRLNKAQYWIPTPSQILIGPTQFSCPVCSKSFNRYNNLQMHMWGHGSQYRKGPDSLKGTQPTAMLRLPCFCCAPGCKHNIDHPRSRPLKDFRTLQTHYKRKHGIKPYMCRKCGKAFAVKGDWRTHEKNCGKIWYCLCGSDFKHKRSLKDHIKAFGHGHGAFGIDCMQEEDEAASEIEHDGDGSM* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g0458 345 SUPERFAMILY beta-beta-alpha zinc fingers 177 206 IPR036236 -
Dod10g0458 345 Pfam Zinc finger, C2H2 type 184 203 IPR013087 -
Dod10g0458 345 Gene3D Classic Zinc Finger 183 206 - -
Dod10g0458 345 Gene3D Classic Zinc Finger 246 320 - -
Dod10g0458 345 ProSitePatterns Zinc finger C2H2 type domain signature. 186 206 IPR013087 -
Dod10g0458 345 SUPERFAMILY beta-beta-alpha zinc fingers 251 288 IPR036236 -
Dod10g0458 345 SMART c2h2final6 268 288 IPR013087 -
Dod10g0458 345 SMART c2h2final6 184 206 IPR013087 -
Dod10g0458 345 SMART c2h2final6 294 317 IPR013087 -
Dod10g0458 345 ProSiteProfiles Zinc finger C2H2 type domain profile. 184 211 IPR013087 -
Dod10g0458 345 PANTHER ZINC FINGER PROTEIN WIP2 1 340 IPR043584 GO:0003700|GO:0010468
Dod10g0458 345 ProSiteProfiles Zinc finger C2H2 type domain profile. 268 288 IPR013087 -
Dod10g0458 345 MobiDBLite consensus disorder prediction 92 110 - -
Dod10g0458 345 PANTHER ZINC FINGER PROTEIN WIP2-LIKE 1 340 - -
Dod10g0458 345 MobiDBLite consensus disorder prediction 80 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g0458 Dod-Chr10 15351290 15355475 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g0458 1 338 C2H2 Transcription Factor Family AT3G57670 55.820 1.38e-124 361
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dod10g0458 zf-C2H2_6 5.9e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g0458 - - gmx:100818131 516.924