Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g0450 ATGAGGAAACCTGATCAGATGGGGAAGGACAAAATGAACAACAACAGCAACATTAATAAGAGCAAGCTAAGGAAGGGGTTGTGGTCACCTGAGGAAGATGAGAAGCTCATGAGGTACATGATAACCAAGGGACATGGCTGCTGGAGTGACATTGCCAAGAATGCTGGCCTCCAGAGGTGTGGTAAAAGCTGCCGCCTTCGTTGGATTAACTACTTGAGACCTGATCTCAAGCGCGGTGCATTTTCGCCACAAGAGGAAGAGCTCATCATTCATTTGCACTCCATTCTTGGCAACAGATGGTCTCAGATTGCGGCACGTCTCCCTGGACGCACAGACAATGAGATCAAGAATTTCTGGAACTCCACAGTGAAGAAAAGGTTGAAAGTCAACAATTCCAACCCATCACCAAACAACAGTGACTCCTCAGAACCTAGAGATGTTCTGGGTGGGATCATGCCCTTTAATGAGCATGAACTCATGACCATTTGCATGGATTCCTCTTCATCAACCTCATCATCATCCATGCAATCCATGCATGCCATGGTTCTAACTGACCAATTTGATCCATTTTCCATGTTGACCAAGAACAATATTCGTTATGACATAGCTGGTGGTATAGCCGGTTTCCCTGGCATGCCTGCATGCTTAACCCAAGTTGGTGTGCTAGATGGGCTTCATGGTGATTATGGGATGTTGGAGACTAATAAAATGGGGTTGGAAAGCGACTTATCCCTTCCTCCACTAGAAAGTAGAAGTAATGAGGACAATAGTGCCTCAATTGATGTGAAAAGCCATAACAACCACTTCAATAATAGTTGCTTCAATAACACTGATCATCAGATTCAGAGCTCCAACGTAGAGGAGTTGTTTGGGTTTGGAAGTCATGGGCAGGAGGAAAACTTAAGAGTGGGAGAATGGGACTTGGATGGGTTAATGCAAGACATATCATATTTTCCTTCCCTTGATTTCCAAGTTTAA 978 0.4448 MRKPDQMGKDKMNNNSNINKSKLRKGLWSPEEDEKLMRYMITKGHGCWSDIAKNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTVKKRLKVNNSNPSPNNSDSSEPRDVLGGIMPFNEHELMTICMDSSSSTSSSSMQSMHAMVLTDQFDPFSMLTKNNIRYDIAGGIAGFPGMPACLTQVGVLDGLHGDYGMLETNKMGLESDLSLPPLESRSNEDNSASIDVKSHNNHFNNSCFNNTDHQIQSSNVEELFGFGSHGQEENLRVGEWDLDGLMQDISYFPSLDFQV* 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g0450 325 MobiDBLite consensus disorder prediction 127 147 - -
Dod10g0450 325 PANTHER TRANSCRIPTION FACTOR MYB83 1 325 - -
Dod10g0450 325 MobiDBLite consensus disorder prediction 1 25 - -
Dod10g0450 325 Pfam Myb-like DNA-binding domain 78 121 IPR001005 -
Dod10g0450 325 Pfam Myb-like DNA-binding domain 25 72 IPR001005 -
Dod10g0450 325 ProSiteProfiles Myb-like domain profile. 20 72 IPR001005 -
Dod10g0450 325 CDD SANT 80 123 IPR001005 -
Dod10g0450 325 Gene3D - 25 77 - -
Dod10g0450 325 SUPERFAMILY Homeodomain-like 23 119 IPR009057 -
Dod10g0450 325 SMART sant 24 74 IPR001005 -
Dod10g0450 325 SMART sant 77 125 IPR001005 -
Dod10g0450 325 CDD SANT 28 72 IPR001005 -
Dod10g0450 325 PANTHER MYB DOMAIN PROTEIN 55 1 325 - -
Dod10g0450 325 ProSiteProfiles Myb-like domain profile. 73 123 IPR001005 -
Dod10g0450 325 MobiDBLite consensus disorder prediction 127 144 - -
Dod10g0450 325 Gene3D - 79 147 - -
Dod10g0450 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 73 127 IPR017930 -
Dod10g0450 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 20 72 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g0450 Dod-Chr10 14945845 14949156 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g0450 1 325 MYB Transcription Factor Family AT3G08500 46.667 4.94e-81 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dod10g0450 Myb_DNA-binding 6.7e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g0450 K09422 - gmx:100796379 448.358