Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g0447 ATGTGCAGTGGTCCAGAGAAATCAAAATCTCCATCTTCATCTGCTGTAGAAGGTTCATCTGGCATCGAAGACATGAAGAATTTAACTGTTAATACTGAAGATTCTTTTTCCAGCTTACTTGAACTTGCTTCTAACAATGATTTTGAAGATTTTAAGCTAGCTTTAGAAAGGGACGCTTCTCTAATAAATGAAATCGGCGTCTGGTATGTTCGCCATAATGGCTCCAAACAAATTGTTCCTGAGCATAGAACTCCTTTGATGGTTGCTGCTACCTATGGGAGTATAGATGTTCTAAAGCTCATACTTTCAAGTCCGGAGGCTGATGTAAATTTCTCCTGCGGGACAGATGAAAGCACAGCCCTTCACTGTGCTGCTTCAGGTGGGTCTATTAATGCAGTTGCTGTTGTGAAGCTTCTTTTATCAGCTGGTGCTGATCTCAATTGTGCCGATGCTAATGGAAATCGTCCTGTTGATGTTATTATCGTTCCTCCTAAGCTCCAAGGCGTGAAAGCAATTCTTGAAGACCTTCTCTCAGACCATGCTTCTGATGAGTCTGTTGATGGATGCTTTATTCCAGCATCGGTTGATTCAAGTCCTGCTTCGGCTGTTCATTTATCATCACTTGAAAATGGGTTGCCATCCTCTCCGTCTGGCTCACCATGTTCTCCTCTGGCTTCAAAGTTTACTGAAGCACCTGTCAATTCTGCATCAGAGAAGAAAGAATATCCAATTGATCCATCACTTCCTGATATTAAAAACAGTATATATGCAACTGATGAGTTCCGCATGTTTTCATTCAAGGTACGACCTTGTTCCCGTGCATATTCTCATGATTGGACTGAGTGCCCTTTTGTTCATCCAGGAGAGAATGCCCGTAGGAGAGACCCCAGGAAGTTCCATTACAGCTGTGTGCCATGCCCTGATTTTAGAAAGGGGGCTTGTAGACGTGGGGATATGTGTGAATATGCTCATGGGGTATTTGAGTGCTGGCTACACCCAGCTCAGTATCGGACAAGGCTCTGCAAGGATGGTACGAGTTGCAACAGAAGGGTATGTTTTTTTGCTCACACAGCAGAAGAGTTACGTCCACTGTATGTGTCCACTGGATCTGCTGTCCCTTCACCCCGGTCAACTGCTTCTACACCTAATGTCATGGACATGGCTGCTGCAATGAGTCTTTTTCCTGGTTCGCCTTCAGCTATTTCTTCCATGGCTCCATCCCCATTTGCGCAGCCAATGTCTCCATCTGCAAATGGCATTTCACACTCATCTGCTGCTTGGCCACAGCCAAATGTGCCGGCTCTTCATTTGCCTGGAAGCAATCTTCAGTCTAGTCGACTGAGATCTTCTCTTAGTGCTCGTGATATGCCACCTGAAGACTTGAATGTATTGCCAGATTTTGATGGCTCCCAGCACCTTTTGAATGAGTTGAGGTGTTTCTCACAGCCCCGTTCTGGTGCAGTCTCGGTGGGTAGATCTGGTCGACCTAAAACACTAGCTCCATCAAATCTTGATGAGCTCTTCTCCGCTGAAATTTCCTCATCTCCTCGATATTCTGAGCCAGCTGTGGCTTCTGTGTTTTCCCCTACACACAAATCTGCTGTTCTCAATCAGTTTCAACAGCTTCAAAGCACTTTATCACCCATAAACACAAATGTCATGTCTCCCAAGAATGTTGAGCATCCTCTATTGCAGGCATCGTTTGGTGTCTCTTCTCCTGGAAGGATGTCACCAAGAAGTGTGGAACCAATCTCTCCAATGAGTGCTCGCATATCAGCGTTCACCCAGCGTGAGAAACAGCAACAGCTGCGGAGTCTTAGCTCAAGGGACCTTGGTGCTAATAATCCTGCTTCAGTTGTTGGGTCCCCTGTAAACTGGTCTAAGTGGGGATCTCCTAATGGAAAAGCAGATTGGTCAGTCAACGGGAATGGGAATGGGAATGGGAATGGTCGACTGCAAAGATCGTCCTCTTTTGAGTTTGGAAATAATGGGGAAGAGCCTGATCTGTCTTGGGTTCAATCCCTTGTCAAGGAGTCTCCACCTGAGATGATGAAGGAGAAGTTGGCAGGTTCTGGCCCTATTGTATCTGACGAAGGAATGAATTCCAATGCTCAAATTGAATCCATTGATCATGCAGTTTTAGGAGCCTGGCTTGAGCAAATGCAGCTGGATCAGCTTGTAGTCTAG 2187 0.4563 MCSGPEKSKSPSSSAVEGSSGIEDMKNLTVNTEDSFSSLLELASNNDFEDFKLALERDASLINEIGVWYVRHNGSKQIVPEHRTPLMVAATYGSIDVLKLILSSPEADVNFSCGTDESTALHCAASGGSINAVAVVKLLLSAGADLNCADANGNRPVDVIIVPPKLQGVKAILEDLLSDHASDESVDGCFIPASVDSSPASAVHLSSLENGLPSSPSGSPCSPLASKFTEAPVNSASEKKEYPIDPSLPDIKNSIYATDEFRMFSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCNRRVCFFAHTAEELRPLYVSTGSAVPSPRSTASTPNVMDMAAAMSLFPGSPSAISSMAPSPFAQPMSPSANGISHSSAAWPQPNVPALHLPGSNLQSSRLRSSLSARDMPPEDLNVLPDFDGSQHLLNELRCFSQPRSGAVSVGRSGRPKTLAPSNLDELFSAEISSSPRYSEPAVASVFSPTHKSAVLNQFQQLQSTLSPINTNVMSPKNVEHPLLQASFGVSSPGRMSPRSVEPISPMSARISAFTQREKQQQLRSLSSRDLGANNPASVVGSPVNWSKWGSPNGKADWSVNGNGNGNGNGRLQRSSSFEFGNNGEEPDLSWVQSLVKESPPEMMKEKLAGSGPIVSDEGMNSNAQIESIDHAVLGAWLEQMQLDQLVV* 729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g0447 728 SUPERFAMILY Ankyrin repeat 28 173 IPR036770 -
Dod10g0447 728 ProSiteProfiles Ankyrin repeat region circular profile. 116 150 - -
Dod10g0447 728 SMART ANK_2a 116 148 IPR002110 GO:0005515
Dod10g0447 728 SMART ANK_2a 81 111 IPR002110 GO:0005515
Dod10g0447 728 ProSiteProfiles Ankyrin repeat profile. 116 151 IPR002110 GO:0005515
Dod10g0447 728 PRINTS Ankyrin repeat signature 135 149 IPR002110 GO:0005515
Dod10g0447 728 PRINTS Ankyrin repeat signature 82 97 IPR002110 GO:0005515
Dod10g0447 728 Gene3D - 22 203 IPR036770 -
Dod10g0447 728 Pfam Ankyrin repeats (3 copies) 68 150 IPR002110 GO:0005515
Dod10g0447 728 MobiDBLite consensus disorder prediction 1 24 - -
Dod10g0447 728 Gene3D - 300 363 - -
Dod10g0447 728 SMART c3hfinal6 300 326 IPR000571 GO:0046872
Dod10g0447 728 SMART c3hfinal6 335 358 IPR000571 GO:0046872
Dod10g0447 728 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 305 325 IPR000571 GO:0046872
Dod10g0447 728 MobiDBLite consensus disorder prediction 596 665 - -
Dod10g0447 728 ProSiteProfiles Zinc finger C3H1-type profile. 305 327 IPR000571 GO:0046872
Dod10g0447 728 PANTHER UNKEMPT FAMILY MEMBER 19 726 IPR045234 -
Dod10g0447 728 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 56 19 726 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g0447 Dod-Chr10 14547919 14552236 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g0447 33 725 C2H2 Transcription Factor Family AT5G12850 54.379 0.0 685
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Dod10g0447 Ank_2 2e-09 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g0447 - - gmx:100792574 1138.25