Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g0399 ATGAGTTGGAACCCACAAATGGAAGTCCATTACAATAACATCAGCTACCCATATAGTACAGCAGGAAGCTTTATTGAGTATTTTGAAGGTCTCACCTACCAACATGTCAACTTCATTTTTTCTGATGCCTCACATACTCAGGAGAATTCATACCCTTTGACTACAGGTTTTTATAAATTTGGACTATCTGAAACTCAGAGTCCTTCATACTATGGTTACAGTCATGGTTATGAGGTGAATCATCATGAACCACCAATGGATGAGTATAGAAGACATTCAGAAAACTTGTGGACAATCAATGAACAGATGGCAACAGTAAGTATAGGAGGGGAAGAAGGAGTAAATAATACCACGCGAGACAATTCTATTGAATGTCCACAAAGACATCATAACAATTCTGATGATTATCAGGTCATTTGGCAAGACAATATCAATCCTGACAGCATGACATATGAGGAACTACTTGAGTTAGGTGAGGCTGTTGGAACACAAAGCCGCGGTCTCTCCTTAAAACAGATCTCCTTGCTTCCAGTTTCAAAGTACAAGTGCAGCTTCTTGAGGAAGAAGTCACGGGATGAGAGATGCGTGATTTGCCAGATGGAATATAAAAGAGGGGACAAGAGGATTACTTTACCATGTGAACACGTTTATCATGCTAGCTGTGGGAAAAGATGGCTTAGCATCAATAAGGCTTGCCCTATATGCTACACGGAGGTGTTTGCCGGCATGCCAAAACATAAAGAATCAGTTAGTCACCGACGAGGGCATAGAAGTAATTAA 780 0.4051 MSWNPQMEVHYNNISYPYSTAGSFIEYFEGLTYQHVNFIFSDASHTQENSYPLTTGFYKFGLSETQSPSYYGYSHGYEVNHHEPPMDEYRRHSENLWTINEQMATVSIGGEEGVNNTTRDNSIECPQRHHNNSDDYQVIWQDNINPDSMTYEELLELGEAVGTQSRGLSLKQISLLPVSKYKCSFLRKKSRDERCVICQMEYKRGDKRITLPCEHVYHASCGKRWLSINKACPICYTEVFAGMPKHKESVSHRRGHRSN* 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g0399 259 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 241 - -
Dod10g0399 259 Pfam Ring finger domain 194 235 IPR001841 -
Dod10g0399 259 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 241 IPR033276 GO:0004842|GO:0016567|GO:0046621
Dod10g0399 259 SMART ring_2 195 235 IPR001841 -
Dod10g0399 259 SUPERFAMILY RING/U-box 189 242 - -
Dod10g0399 259 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 158 241 IPR013083 -
Dod10g0399 259 ProSiteProfiles Zinc finger RING-type profile. 195 235 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g0399 Dod-Chr10 12388347 12391086 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g0399 5 241 C3H Transcription Factor Family AT3G63530 41.057 4.72e-58 183
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g0399 K19045 - gmx:100805963 419.853