Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g0295 ATGGGACGCGGAAAGATTGAGATAAAGAGGATCCAGAACACGACGACGAGGCAGGTGACATTCTCGAAGCGTAGAGGTGGGCTGTTGAAGAAGACCAAAGAGCTTGCTGTCCTGTGTGATGCTCAGATCGGACTCATCATCTTCTCCAGCACTGGCAAGTTGTTTGAGTTCTGCAGTGAACCCTTGAGGATGGAGCAAATCATTGACAAGTACCAGCGGGCTACAGGAACTCGCATAATACAACAGCATGATGATCACCACCGGGAAGATTTATTCAATGACATGGCCATGCTGAGGCGTGAAACTCTCAGCCTTGAGCTGGGAATTCAACGCTATCTTGGGGAGGGCATAAGCTGTCTACAATATGAAGACTTAACTAAGCTTGAAGAAGAATTAGAAAACTCTGTTGCCAAGGTTCGGAACCGTCAGAATGAGCTCTTGCAACAGCAGATGGAGAATCTGCGAAGGAAGGAAAGAATCTTGGAAGATGAAAACTGCAATTTGTCCAACTGGGAGCACCGGGCAGTGTTGGAGTTTCAGAAGGCAGCGGTGGAAGCAAGTAAGCAGCCAGTGCAGCAGCATCATCATCACCAACAACTAATGGATCACTTCTCATTCTTTGATGAGCAACCTTCTGGTAGCATCCTTCAACTTGGTGCACCTGTGCTTCCACAACTTCACCCATATCTTCAGCTGGCGCAGCCCAATATTCATGACTCAGTCAGGGCCCCGGAGCCATATAAACATGATGAGTAA 756 0.4788 MGRGKIEIKRIQNTTTRQVTFSKRRGGLLKKTKELAVLCDAQIGLIIFSSTGKLFEFCSEPLRMEQIIDKYQRATGTRIIQQHDDHHREDLFNDMAMLRRETLSLELGIQRYLGEGISCLQYEDLTKLEEELENSVAKVRNRQNELLQQQMENLRRKERILEDENCNLSNWEHRAVLEFQKAAVEASKQPVQQHHHHQQLMDHFSFFDEQPSGSILQLGAPVLPQLHPYLQLAQPNIHDSVRAPEPYKHDE* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g0295 251 Coils Coil 122 174 - -
Dod10g0295 251 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Dod10g0295 251 PANTHER PROTEIN TRANSPARENT TESTA 16-LIKE ISOFORM X1 1 238 - -
Dod10g0295 251 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Dod10g0295 251 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Dod10g0295 251 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Dod10g0295 251 ProSiteProfiles K-box domain profile. 88 182 IPR002487 GO:0003700|GO:0005634|GO:0006355
Dod10g0295 251 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Dod10g0295 251 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 238 - -
Dod10g0295 251 Pfam K-box region 84 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Dod10g0295 251 Gene3D - 14 95 IPR036879 GO:0003677|GO:0046983
Dod10g0295 251 SUPERFAMILY SRF-like 2 87 IPR036879 GO:0003677|GO:0046983
Dod10g0295 251 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Dod10g0295 251 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Dod10g0295 251 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g0295 Dod-Chr10 7828232 7832465 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g0295 1 243 MADS-box Gene Family AT5G23260 49.206 9.95e-71 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Dod10g0295 K-box 3.9e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g0295 - - gmx:100783876 334.724