Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g0273 ATGGAGCAAATCAATAAGGATGATGTGACCTTCTCAAAGAGAAAACTAGGGCTTTTCAACAAAGTGACTGAACTCTCCATCATTTGCCAAGCGGAAACTGCTTTGATTGTCACATCCCAAAATGGCAAGTTGTACACTTGTGGCTACCCGAGTCCAGACACCGTCATTCGTCGCTTCCTCACCAAAGGGTCCTATTCGAAAAGTGAACTTGCCGAAAAACATAAGCAAAAAGAGAGTGTGGAAACCTTTAGAGTTCAATATCTGGCCACACAAGAGACTTTGAAGGAAGAGAAGAAGCGCCACGATAAGGCCATGGAGGCAAACAAGGCCTTAATGGGGTTCCCTTCATGGTGGGAATACTCCATTGACGAGATGGGTTTGGAGGAGCTTGAGCAATTCAAGGCCTCATTGGAACACTTGAAGATTAACCTTATGGCAACAATGGAGCAGAAGAGGGTCAATTCAATTCAACCAATCCCCTTTCCTTCAATGCTTCCAATGCAAATGTCTTCGAATTTTTCTCCAATCTTGAATGGGGCCTTATGCACTAACCAAGAACAAGCATGGGCTTGGAGGAATAATGGTATTGCTAGCAGTAGTAATAGTAGTTCTTTGGGAACATGGGAGTGGAGGAATAATGATATTGCTAGTAGTAGTAATAGTTCTTTGCTTCCAAATGTTGATTTTGGCTATTATTGTCACAATTAG 708 0.4251 MEQINKDDVTFSKRKLGLFNKVTELSIICQAETALIVTSQNGKLYTCGYPSPDTVIRRFLTKGSYSKSELAEKHKQKESVETFRVQYLATQETLKEEKKRHDKAMEANKALMGFPSWWEYSIDEMGLEELEQFKASLEHLKINLMATMEQKRVNSIQPIPFPSMLPMQMSSNFSPILNGALCTNQEQAWAWRNNGIASSSNSSSLGTWEWRNNDIASSSNSSLLPNVDFGYYCHN* 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g0273 235 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 6 46 IPR002100 GO:0003677|GO:0046983
Dod10g0273 235 Gene3D - 9 81 IPR036879 GO:0003677|GO:0046983
Dod10g0273 235 PANTHER MADS BOX PROTEIN 2 159 - -
Dod10g0273 235 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 2 159 - -
Dod10g0273 235 ProSiteProfiles MADS-box domain profile. 1 51 IPR002100 GO:0003677|GO:0046983
Dod10g0273 235 Coils Coil 130 150 - -
Dod10g0273 235 SMART madsneu2 1 50 IPR002100 GO:0003677|GO:0046983
Dod10g0273 235 SUPERFAMILY SRF-like 6 62 IPR036879 GO:0003677|GO:0046983
Dod10g0273 235 PRINTS MADS domain signature 28 49 IPR002100 GO:0003677|GO:0046983
Dod10g0273 235 PRINTS MADS domain signature 13 28 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g0273 Dod-Chr10 7548678 7549385 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g0273 9 152 Type I MADS-box Gene Family AT5G60440 36.184 7.55e-22 89.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Dod10g0273 SRF-TF 3.8e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g0273 - - aip:107627188 201.06