Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g0253 ATGGGAGGAAGGCCAAGGTGCTTCTTGGACATCAGCATCGGAGATGAGTTAGAAGGCAGGATTCTGGTGGAGCTCTACGACGACGTCGTTCCCAAAACCGCCGAGAACTTCAGGGCTCTTTGTACTGGCCACAAGGGCACTGGCCCTAACACTGGGGTACCCCTCCATTACAAGGGTTCTTGCTTTCATCGTGTTATTAAAGGCTTTATGATCCAAGGAGGTGATATATCTGCTGGAGATGGTACTGGAGGAGAATCTATATATGGACTGAAGTTTGAAGATGAAAATTTTGATTTGAAGCATGAAAGGAAAGGGATGTTGTCGATGGCCAATTGTGGTCCCAATACAAATGGGTCTCAGTTTTTTATCACAACCACGCGAACTCCTCATCTAGATGGTAAGCATGTTGTAATTGGGAGAGTAGTTAAAGGAATGGGAGTGGTCCGTTCAGTCGAGTATGTGACAACTGGAGATAATGACCGTCCTGAACTCGATGTTAAAATTGTGGATTGTGGAGAAATTCCTGAAGGAGAAGATGGTGGAATATATAACTTTTTCAAAGATGGTGATACTTATACTGATTGGCCAGCAGACCTTGATGAGCAAACTGACGAACTTCAATGGTGGATGAATGCTGTAGACTCCATTAAAACTTTTGGAAATGATTACTACAAGAAACAAGACTATAAAATGGCTCAAAGGAAGTATCGGAAGGCTCTGCGCTACCTGGATATTTGTTGGGAGAAAGAAGGGATTGATGGAGAAAAAAGTGCAGCTTTGAGGAAAACTAAGTCTCAGATTTTTACAAACAGCTCTGCTTGTAAACTAAAATTAGGAGACCTCAAAGGAGCATTATTGGATGCAGACTTCGCACTGCGTGAAGAAGACAATAATGTCAAAGCTTTATTCCGGCAAGGACAGGCACACATGGCACTCCATGATGTTGATGCTGCAGTTGAAAGCTTTAAAAATGCACTGATCCTAGAGCCAAACGATGCTGGGATTAAGAAGGAACTTGCTGCTGCCAGGAAGAAGATTGCTGATAGGCGTGATCAGGAGAAGAAGGCATATAGCAAGATGTTTCAATAA 1089 0.4307 MGGRPRCFLDISIGDELEGRILVELYDDVVPKTAENFRALCTGHKGTGPNTGVPLHYKGSCFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFDLKHERKGMLSMANCGPNTNGSQFFITTTRTPHLDGKHVVIGRVVKGMGVVRSVEYVTTGDNDRPELDVKIVDCGEIPEGEDGGIYNFFKDGDTYTDWPADLDEQTDELQWWMNAVDSIKTFGNDYYKKQDYKMAQRKYRKALRYLDICWEKEGIDGEKSAALRKTKSQIFTNSSACKLKLGDLKGALLDADFALREEDNNVKALFRQGQAHMALHDVDAAVESFKNALILEPNDAGIKKELAAARKKIADRRDQEKKAYSKMFQ* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g0253 362 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 105 120 IPR002130 GO:0000413|GO:0003755
Dod10g0253 362 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 133 148 IPR002130 GO:0000413|GO:0003755
Dod10g0253 362 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 25 40 IPR002130 GO:0000413|GO:0003755
Dod10g0253 362 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 62 74 IPR002130 GO:0000413|GO:0003755
Dod10g0253 362 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 120 132 IPR002130 GO:0000413|GO:0003755
Dod10g0253 362 SUPERFAMILY Cyclophilin-like 4 174 IPR029000 -
Dod10g0253 362 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 3 362 - -
Dod10g0253 362 CDD cyclophilin_ABH_like 5 172 - -
Dod10g0253 362 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 8 173 IPR002130 GO:0000413|GO:0003755
Dod10g0253 362 SUPERFAMILY TPR-like 208 360 IPR011990 GO:0005515
Dod10g0253 362 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 57 74 IPR020892 GO:0003755|GO:0006457
Dod10g0253 362 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 9 172 IPR002130 GO:0000413|GO:0003755
Dod10g0253 362 ProSiteProfiles TPR repeat profile. 299 332 IPR019734 GO:0005515
Dod10g0253 362 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP40 3 362 - -
Dod10g0253 362 SMART tpr_5 299 332 IPR019734 GO:0005515
Dod10g0253 362 SMART tpr_5 265 298 IPR019734 GO:0005515
Dod10g0253 362 SMART tpr_5 213 246 IPR019734 GO:0005515
Dod10g0253 362 Gene3D Tetratricopeptide repeat domain 208 362 IPR011990 GO:0005515
Dod10g0253 362 Pfam Tetratricopeptide repeat 300 332 IPR013105 -
Dod10g0253 362 Gene3D - 1 179 IPR029000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g0253 Dod-Chr10 7020643 7025954 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g0253 19 171 U-box Gene Family AT5G67530 44.156 3.86e-33 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g0253 K05864 - gmx:100804110 632.098