Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g0217 ATGTCCTCTCAAAGAAGTGATCACGGTCACGCCGTCCACTTTTTCAAGGTTATTCTTCAAAGCAACCTTCGAGATGGAGAGCTGAGGGTGCCCAAAAGTTTTGTGCAGAGATATTGGCATGAAGTATCAGCCACAGTGGTTCTAAGGCTTCCAAATGGCACTGAATGGAAAGTTTATTGGCTGAAACGTGACGGTGGCGTTTGGTTTCGCAATGGCTGGAGAAAGCTTGCAGAATACTTGTCTTTGAAGGAGTCGCAGTTCATGGTGTTTCGATACGAAGGAGAATCCAAGTTTAATGTGATCGTGTTGGGTACAAGCGGCTTAGAAATTAAATACCCTTCATCCAAAGAAGAAGATGATGATGGAGAAGGCCAAAAGGGTTATGAGAGTGATAGCTCTCTCGAAATTCTTGATGGGAAGAAAAGGCCAAGATCTCCTTCATCTTCTTCTCAGGCTTGTAAGAGGACGAAAAGAAGCCCAAAAGAAGAAGAACCTGAAAGCTACAATCTCCATGCTGAAACTAAGCATGGGAAGAAGAAAGAATGTGCAGAAGTCTTGGATGAGAGAATGAGGAACTTTCATGAGGCAGTGAAGAAGAGTTTCCACTCTGACAAGGACTTTTTCATGTGTTCACTCAAAAGATCATATACTGTAGTGCCAAACGAGTTTGCTAAACCAGTTCTTCAAGCGAAAGAAGGAGAAGCTACCCTTTTTTTCCAGGAGAGGGCTTGGGATGTCAAGTTGAAGCACGCTTGTAGACAATTAAGAATCACTTGTGGTTGGAAGAAGTTTTTGGTGGACAATAATTTGAAAACCGGAGATGTTTGCGTTTTTGAGCTGATCAATCGCAAACGAGTTTCATTCGGAGTTCATATTCATCGTTTCGGAGATGAATCGAGCACTCGTCGCTTCCATGAGCCAATGAAGCGTGGCACAGGTGGTAAAGGCTCGGAACGTACCCTAGCTAAAAGGGCGAGTGTTCGAGTCCTTTGTGCCGCTATGAGGCCTTCTTTGGTGGGTAATCACATAAGAATCCCGATGAAGGAGAACAGAGGTTTGCTTTTGATTTTTGTTTTCAAGATGAAGGACGGGGTGGCAGCGGAGGTAATACCACTTGACTTCATTAGGAATTACACTGTACAGAGTGGAACATGCCGACCTTGCGAGCTGGAGAGAGATCATGGCCTGTGA 1191 0.4442 MSSQRSDHGHAVHFFKVILQSNLRDGELRVPKSFVQRYWHEVSATVVLRLPNGTEWKVYWLKRDGGVWFRNGWRKLAEYLSLKESQFMVFRYEGESKFNVIVLGTSGLEIKYPSSKEEDDDGEGQKGYESDSSLEILDGKKRPRSPSSSSQACKRTKRSPKEEEPESYNLHAETKHGKKKECAEVLDERMRNFHEAVKKSFHSDKDFFMCSLKRSYTVVPNEFAKPVLQAKEGEATLFFQERAWDVKLKHACRQLRITCGWKKFLVDNNLKTGDVCVFELINRKRVSFGVHIHRFGDESSTRRFHEPMKRGTGGKGSERTLAKRASVRVLCAAMRPSLVGNHIRIPMKENRGLLLIFVFKMKDGVAAEVIPLDFIRNYTVQSGTCRPCELERDHGL* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g0217 396 SUPERFAMILY DNA-binding pseudobarrel domain 11 106 IPR015300 -
Dod10g0217 396 MobiDBLite consensus disorder prediction 113 142 - -
Dod10g0217 396 SUPERFAMILY DNA-binding pseudobarrel domain 202 294 IPR015300 -
Dod10g0217 396 ProSiteProfiles B3 DNA-binding domain profile. 202 296 IPR003340 GO:0003677
Dod10g0217 396 Pfam B3 DNA binding domain 14 102 IPR003340 GO:0003677
Dod10g0217 396 Pfam B3 DNA binding domain 213 294 IPR003340 GO:0003677
Dod10g0217 396 MobiDBLite consensus disorder prediction 155 176 - -
Dod10g0217 396 PANTHER B3 DOMAIN-CONTAINING 10 294 - -
Dod10g0217 396 Gene3D - 186 297 IPR015300 -
Dod10g0217 396 CDD B3_DNA 218 294 IPR003340 GO:0003677
Dod10g0217 396 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 10 294 - -
Dod10g0217 396 SMART B3_2 14 106 IPR003340 GO:0003677
Dod10g0217 396 SMART B3_2 208 296 IPR003340 GO:0003677
Dod10g0217 396 MobiDBLite consensus disorder prediction 113 176 - -
Dod10g0217 396 CDD B3_DNA 13 103 IPR003340 GO:0003677
Dod10g0217 396 Gene3D - 7 107 IPR015300 -
Dod10g0217 396 ProSiteProfiles B3 DNA-binding domain profile. 13 106 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g0217 Dod-Chr10 6329586 6339991 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g0217 14 297 B3 DNA Binding Superfamily AT3G18990 26.923 2.30e-37 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Dod10g0217 B3 3e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g0217 - - lang:109332968 276.174