Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g0212 ATGGAAAAGGTGGCTCCGCCGATCTTCATGCACCAAACACTCGCGAGTCGGTTCTGTGATCCGCCTTCGTCGGTGACGACTACGACGACGGCGGCGAAGAAGAAGCGCGATCTGCCGTACGACGTCGTTCAGCGGAATCCAAACGACGACTGGAACCCAAACGCGTGGAGCTGGGACAGTGTCAGGTTCCTCGGCAAACCCTTACCCGCCCCACCGCACCAAAACGCTGTCGTTTCGGCTCCCAACAGCAACAACGAAAAAGAAGTGGAAGACGAAACGCTGCGTTTAAATCTAGGTAGCGGTGTTGGTGTTGGTGGTGGTGGTGACCCAAACGGCAACGTTTCGCGGTCTAACAAGAGGGTGCGTTGTGGGTCACCCACCACCGGAACGGCGTCGTATCCGATGTGCCAGGTGGATAACTGCAAGGAAGATCTGTCCAACGCGAAAGACTATCACAGACGCCACAAAGTGTGTGAGCTTCACAGCAAAGCCTCCAAGGCACTCCTTGGAAACCAAATGCAAAGGTTTTGCCAGCAGTGTAGCAGGTTTCACCCTCTGTCGGAGTTTGATGAAGGGAAGCGAAGCTGTCGGCGTAGACTTGCCGGGCATAACCGTCGGAGAAGGAAAACCCAGCCGGAAGATGTCACTTCACGGCCGGAGAGCGTGGCTACAGGCAATGTGGAAATTTTCAACTTGTTGAGTGCCATAGCGAGTTCGCAAGGAAAGCTTGAGGAAAGAAGCAAGATTGCCCCTCAAGTTCCGGATAGAGAGCAGCTTGTTCAGATTCTCAACAGGATACCTTTGCCAGCTGATCTTGCTGCAAAGTTGCTCAATGCTGGTAACTTAGGTGGTAAAGGTCATGTGCAGCCTTCACCCTATCATCATGACAAAGTGAACCAGAGCAATTCTGGCCCCTTAACTAAGGACTTGCTTGCTGTTCTTTCGACCACTCTATCAGCATCCCCTCCCAATGGCACTGCATCGCTCTCTCAAAAAAGTAGCCAGAGTAGCGATAGTGACAAGTCTAGGATTAGTGCTGACCAAATTGGTGACAGTTTACAAATGATACAACCGCCGCTAGAGTTCACACCTGTTGGAGATGAAAGAAGCAGTGGCAGTTCACAGTCTCCAGTTGAAGATGCAGGCTGCCCGGAAGTTCGAGTTAATTTACCGCTGCAACTTTTTAGCTCCTCCCCCGAAGGTGTAAGCCTGCCAAAATTGGCACCTTCTCAAAAGTATTTCTCATCTGACAGCAGTAACCCTGTGGATGAGAGGTCACCATCATCATCTCCTCCTGTTATAGAGAAGCAATTTGATTTCCGGGGTGTGACTAGAGGTCTCAACACTGACAGCATTCCAAGCAGAAGAGAAGTCAATGCAAATAAAGAAGCTAGCCAAAGTCATAGTTGTAATATTTCTCTAGATCTCTTTAATGTGACAAATAGCAGAATCCAACCTAGTTCACTTCAAAGTGTTCCATTTCAAGCTGGGTATACATCTTCGGGCTCTGATCATTCACCTCCCAGTTTGAATTCAGATGCTCAGGATCGTACTGGGAGAATAATGTTTAAACTATTTGACAAGGATCCTAGCCATTTCCCAGGGGCACTGCGAACACAGATTTATAATTGGCTTTCTAATAGGCCATCAGACATGGAGAGCTACATAAGGCCTGGCTGTGTGGTACTATCTGTTTATGCTGCAATGTCTTCTGCTGCCTGGGAGCAACTAGAAGAAAACTTCCTTCAACATGTCCATTCTTTAATTCAAAGCATGGATTTTGATTTTTGGAGAAATGGAAGGTTTCTGGTTCATTCTGGTAATCAGTTAGCATCACACAAGGATGGAAAAATTCACTTATGCAAACCATGGAGAACATGGAGGTCTCCAGAGTTGATATCAGTGTCCCCTTTGGCAATTGTTAGTGGACAAGAAACCTCTATATTATTGAAGGGTAGAAACCTTTCAACTCCTGGCACCAAGATTCATTGCGCAGGCACTGGCTGTTACACGTCGGTGGAAGTTATTGGATCTGCATGTCATGGGGTGGCCTATGACAAGATAAAACTGAGTGGTTTTAAAGTTCAGAATGCATCTCCTGGTGTTTTGGGTCGCTGCTTTATTGAGGTTGAAAATGGTTTCAAGGGTAACAGTTTTCCAGTGATAATAGCTGACGCAACCATTTGTAAGGAATTGATACCACTTGAATCTGAATTCGATATGGAAGAAAAAATATGTGATGCCATTTCAGATGAGCATGAATCTGATCTTGGAAGGCCCAGGTCAAGGGAGGAAACTCTGCACTTCCTAAATGAGCTTGGATGGCTGTTCCAAAGAGAAAGGTTCTCATACATGCATTTGGTTCCAGATTATTCACTTGACAGATTCAAATTTGTACTCACATTTTCTGTGGAAAGAAACTGTTGCATGCTAGTCAAAACCCTTCTGGATATGCTGGTTGATAAACACTTGGAAGGTCAGTGGTTGTCAACTGCATCAGCAGAGATGCTCAATGCAATCCAACTCTTAAATAGAGCAGTGAAAAGAAAGTATGTAAACATGGTTGATCTGCTCATCCACTATTCTTTACCTACCAAAAATGATGCATCCAGGAAATATGTATTTCCGCCAAATCTTGAGGACCCTGATGGCATTACACCCTTGCACTTGGCAGCATGCACATCATGTTCTGAGGGGGTAATTGACTCCTTAACAAATGATCCGCAGGAGATTGGATTGAACTGCTGGCAGTCCCTTGTGGATTCAAATGGGCAGACCCCTCATGCTTATGCCATGATGAAGAATAATCACTCTTATAATGTACTGGTTGCTCGTAAACTTGCTGATAGAAGAAGAGGTCAAGTTTCAGTAACAATTGACAATGAAATAAGGCAATCATCGATGAGAATTGAGCTTAAGCAAAGGCAGAGCGACCAAGTCAAAAGAGGTCAGAATTCTTGCGCTAAGTGTGCTATTGCAGAAATTCGCTTTGACAGGAGAGTTCCAGGTTCACGTGGTTCTCTTCACCGACCCTTTATTCATTCCGTGCTAGCTATTGCTGCTGTATGTGTATGTGTTTGTCTGTTCCTCCGTGGACGCCCTTCTGTTGGCTCAGTTTCTCCCTTCAGTTGGGAAAATTTGGGTTATGGCACAATGTAG 3159 0.4593 MEKVAPPIFMHQTLASRFCDPPSSVTTTTTAAKKKRDLPYDVVQRNPNDDWNPNAWSWDSVRFLGKPLPAPPHQNAVVSAPNSNNEKEVEDETLRLNLGSGVGVGGGGDPNGNVSRSNKRVRCGSPTTGTASYPMCQVDNCKEDLSNAKDYHRRHKVCELHSKASKALLGNQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQPEDVTSRPESVATGNVEIFNLLSAIASSQGKLEERSKIAPQVPDREQLVQILNRIPLPADLAAKLLNAGNLGGKGHVQPSPYHHDKVNQSNSGPLTKDLLAVLSTTLSASPPNGTASLSQKSSQSSDSDKSRISADQIGDSLQMIQPPLEFTPVGDERSSGSSQSPVEDAGCPEVRVNLPLQLFSSSPEGVSLPKLAPSQKYFSSDSSNPVDERSPSSSPPVIEKQFDFRGVTRGLNTDSIPSRREVNANKEASQSHSCNISLDLFNVTNSRIQPSSLQSVPFQAGYTSSGSDHSPPSLNSDAQDRTGRIMFKLFDKDPSHFPGALRTQIYNWLSNRPSDMESYIRPGCVVLSVYAAMSSAAWEQLEENFLQHVHSLIQSMDFDFWRNGRFLVHSGNQLASHKDGKIHLCKPWRTWRSPELISVSPLAIVSGQETSILLKGRNLSTPGTKIHCAGTGCYTSVEVIGSACHGVAYDKIKLSGFKVQNASPGVLGRCFIEVENGFKGNSFPVIIADATICKELIPLESEFDMEEKICDAISDEHESDLGRPRSREETLHFLNELGWLFQRERFSYMHLVPDYSLDRFKFVLTFSVERNCCMLVKTLLDMLVDKHLEGQWLSTASAEMLNAIQLLNRAVKRKYVNMVDLLIHYSLPTKNDASRKYVFPPNLEDPDGITPLHLAACTSCSEGVIDSLTNDPQEIGLNCWQSLVDSNGQTPHAYAMMKNNHSYNVLVARKLADRRRGQVSVTIDNEIRQSSMRIELKQRQSDQVKRGQNSCAKCAIAEIRFDRRVPGSRGSLHRPFIHSVLAIAAVCVCVCLFLRGRPSVGSVSPFSWENLGYGTM* 1053
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g0212 1052 Gene3D - 127 197 IPR036893 GO:0003677|GO:0005634
Dod10g0212 1052 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 14 38 1052 - -
Dod10g0212 1052 MobiDBLite consensus disorder prediction 100 126 - -
Dod10g0212 1052 MobiDBLite consensus disorder prediction 361 382 - -
Dod10g0212 1052 Pfam SBP domain 136 209 IPR004333 GO:0003677
Dod10g0212 1052 SUPERFAMILY Ankyrin repeat 800 937 IPR036770 -
Dod10g0212 1052 MobiDBLite consensus disorder prediction 318 344 - -
Dod10g0212 1052 MobiDBLite consensus disorder prediction 412 437 - -
Dod10g0212 1052 SUPERFAMILY SBT domain 134 214 IPR036893 GO:0003677|GO:0005634
Dod10g0212 1052 MobiDBLite consensus disorder prediction 412 433 - -
Dod10g0212 1052 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 38 1052 IPR044817 GO:0003677
Dod10g0212 1052 Gene3D - 796 990 IPR036770 -
Dod10g0212 1052 MobiDBLite consensus disorder prediction 200 221 - -
Dod10g0212 1052 MobiDBLite consensus disorder prediction 494 514 - -
Dod10g0212 1052 MobiDBLite consensus disorder prediction 111 126 - -
Dod10g0212 1052 ProSiteProfiles Zinc finger SBP-type profile. 133 210 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g0212 Dod-Chr10 6245004 6249806 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g0212 3 1052 SBP-box Gene Family AT1G20980 50.979 0.0 968
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Dod10g0212 SBP 5.4e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g0212 - - lang:109360589 1517.29