Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g0207 ATGGCTGCCAACTCCTCATCAACACCTTTTCTGGGAATCAGACAAGAAATTCAGAGTGAGATTACCCAACACCAATCCTCCACCACAATTGCTTCCTCAACTGCTGCTCCAACCACAGTACCTCAAAAGAGAAGGAGGAACCAGCCTGGAACAACATATCCAGATGCGGAGGTGATAGCACTATCTCCCAAGAGCCTAATGGCAACGAACAGGTTCATATGTGAGGTGTGCAACAAAGGGTTCCAAAGGGAGCAAAACTTGCAGCTGCACAGAAGAGGACACAACCTGCCGTGGAAGCTAAAGCAGAAGACTACAAAAGAGCAGCCAAAGAGGAAGGTTTATCTGTGCCCTGAGCCCACATGCGTCCACCATGACCCTTCAAGGGCTCTCGGAGACCTCACTGGCATCAAGAAGCACTTCTCTCGCAAGCACGGCGAGAAGAAGTGGAAGTGCGATAAGTGCTCCAAGAAATATGCTGTTCAGTCTGATTGGAAGGCCCATTCCAAGACTTGCGGCACCAGAGAGTATAGGTGCGACTGCGGCACCCTCTTCTCCAGGCGTGACAGTTTTATCACTCATAGAGCCTTTTGTGATGCGCTAGCACATGAGACTGCAAGACACCCTTCAAACTTGAACCTTTTGGGAACTCACAATCTGTATGGCACAAACCACATAAGCTTAGGCCTATCTCAAGTGGGTACCCCAATCTCTCAACTCCAAAACCAGAACCATGCCGCAGCCACTAACAACAACAGTATCTTGAGCCTTGGCAGTGGAAGTACTAGTGCACCAAAGTTTGAGCACTTATTCTCACCTAATTTGCATCATCATCAGTCAATGTCAGCTAATTCCTCAGCTTTCTACATCACTGACCCAAATCAAGGATTTCAAGACCACCAAGGACCCTCATTCTCAGGCAAGGAACTGCATGGTCTTATGCACCTTCCTGATTTTCAATGCAACACCAACAACAACTCCACTTCTGCAATATCAGTATCTGCTCCTCCTAATAATCTGGTTAACCTCAGTTTCATTCCAAGCAACAGCAACAGTGGTGGCGGCATTAATATCCCTGATCAATTCAGCAACATGAGTAGTGGAGGTAATCAAGGAACAACACTCTACACTAATAGCCCTGCTGTAAGTAATAATAATAATCAAGTTGGGCCAAGTTTGTCTTCACTCTTTGGCAATCCATCAGTGCAACAAGAGAACATGTTCCCCCATATGTCCGCCACAGCATTGCTTCAGAAAGCTGCTCAAATGGGTTCAGCTACAAGCACCGATGGTTCCTCTATACTAAGAGGAATAGTTAGTTCCTCAACAAATGGTGCAGAATCTGATAGGCAAATAATTCTGTCCAATAATCTCGCCACCTTTGGAAGTGATAATAGAGGTGAAGGCATGGGAAATGTTGACCATCACCATCATCTACGTGGAATATTGATGAACTCTCTTGCAAATGGAAACGCTACTTCTTTATTTGGCAATGTGAAAGGGAACCAAAACAACCTTGTTCAGTTTCAAAACGTGGAGGAGCCAAATAAGTTGTCCCAAAATAATCTGGGTGTGTGCTTTGGAGGATCTGATAAGTTGACGCTGGACTTTCTGGGTGTCGGAGGAATGGTGAGAAACATGAGTGGTGGGTTTTCACAAAGAGACCAGCAACATTCCATGGGTACGATGAGCTCTTTGGATCCTAAACTGGAATCAGCAGCACAGACAAACTAA 1731 0.4575 MAANSSSTPFLGIRQEIQSEITQHQSSTTIASSTAAPTTVPQKRRRNQPGTTYPDAEVIALSPKSLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEQPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAHETARHPSNLNLLGTHNLYGTNHISLGLSQVGTPISQLQNQNHAAATNNNSILSLGSGSTSAPKFEHLFSPNLHHHQSMSANSSAFYITDPNQGFQDHQGPSFSGKELHGLMHLPDFQCNTNNNSTSAISVSAPPNNLVNLSFIPSNSNSGGGINIPDQFSNMSSGGNQGTTLYTNSPAVSNNNNQVGPSLSSLFGNPSVQQENMFPHMSATALLQKAAQMGSATSTDGSSILRGIVSSSTNGAESDRQIILSNNLATFGSDNRGEGMGNVDHHHHLRGILMNSLANGNATSLFGNVKGNQNNLVQFQNVEEPNKLSQNNLGVCFGGSDKLTLDFLGVGGMVRNMSGGFSQRDQQHSMGTMSSLDPKLESAAQTN* 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g0207 576 SMART c2h2final6 72 94 IPR013087 -
Dod10g0207 576 SMART c2h2final6 114 144 IPR013087 -
Dod10g0207 576 SMART c2h2final6 149 169 IPR013087 -
Dod10g0207 576 MobiDBLite consensus disorder prediction 22 53 - -
Dod10g0207 576 Pfam Zinc-finger double-stranded RNA-binding 72 94 IPR022755 -
Dod10g0207 576 MobiDBLite consensus disorder prediction 22 49 - -
Dod10g0207 576 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 1 555 - -
Dod10g0207 576 SUPERFAMILY beta-beta-alpha zinc fingers 71 169 IPR036236 -
Dod10g0207 576 ProSiteProfiles Zinc finger C2H2 type domain profile. 72 94 IPR013087 -
Dod10g0207 576 ProSitePatterns Zinc finger C2H2 type domain signature. 74 94 IPR013087 -
Dod10g0207 576 Gene3D Classic Zinc Finger 55 119 - -
Dod10g0207 576 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 555 - -
Dod10g0207 576 Gene3D Classic Zinc Finger 127 206 - -
Dod10g0207 576 MobiDBLite consensus disorder prediction 548 576 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g0207 Dod-Chr10 6057913 6063847 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g0207 10 548 IDZ Gene Family AT2G02070 45.254 1.04e-127 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dod10g0207 zf-C2H2_jaz 3.5e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g0207 K25870 - gmx:100806198 698.353