Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g0206 ATGAAGCGCGAGTTCTACGAAATCTCCGACGACGAATGGGACAACCACGACGACTTCAAGCCATCCCGAGTCCTCAAGAGACCCCGCTCTTCCCCTTCTCCCCCGCCGCCCATCGAGTCCTTCGCCTACAACAACACCTCCCGCAACAACAACAACAGCAACCCCGAGATTTCCGGCGGCGACGACGACGACGACGATTGCGTCGAAATCACGCGGAATTCGGCGGGTTTTCCGGACGAGCTGGACGACCTGGAGGATGCTGACGTGGACGACAACGCGCCCGCCGCCGCCGCCGCGCCGAATCGTGGCCGTCGGTTCATCGTCGACGATGACGATGAAGACGACAGCGACAGAGACAATGATAGGGATAGGGATAGGGATAGGAGTGTTGCGGAATTGTATGAAATAGGGTCCTCTTCTTCTTCTTCGGAGGAAGATATTGGGGTTGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGAGGTTGATGAAGGTGATGTGGTTGGTAGGGCTTTGCAGAAGTGCGCGAGAATATCGGCGGAGTTGAAGGGGGAGCTGTTCGGGTCGTCGGGGACGGCGTGCGAGAGGTATTCCGAGGTGGAATCTTCTTCAGTGAGGATCGTCACTCAGGAGGATGTGGATGTTGCGTGTGGGTCTGAGGATTCGGATTTTCAGCCACTATTGAAGCCGTATCAGCTGGTTGGTGTCAACTTTTTGCTTCTCTTGTATCGGAAGGGGATTGGAGGAGCCATATTGGCAGATGAAATGGGCCTAGGCAAAACAGTTCAGGCCATTACGTATTTAACTTTGTTGAACCACTTGCATAATGATCCTGGTCCACATCTTATAGTATGTCCGGCTTCTGTTTTGGAAAACTGGGAAAGGGAGCTAAAGAAGTGGTGCCCATCATTTTCTATTCTTCAATACCATGGGGCTGGACGGGCAGCATATTGCAAGGAGTTGAGCTCCTTGTCCAAGGCAGGATTGCCTCCCCCATTTAACGTTCTTCTTGTGTGTTATTCACTTTTTGAACGGCACAGTGCACAGCAGAAAGATGATCGTAAAGTTTTGAAGCGCTGGAAGTGGAGCTGTGTGCTGATGGATGAGGCACATGCTCTGAAGGACAAAAATAGCTTTCGGTGGCAAAATCTGATGGCTGTTGCACGAAATGCAAACCAGCGGTTAATGCTGACTGGGACACCGCTTCAGAATGATCTACATGAGTTATGGTCATTGTTGGAGTTTTTGATGCCTGATATTTTTGCTACTGAAGGTGTTGACTTGAAAAAGTTACTAAATCCAGAGGACAGAGATTTAATTGGTCGTATGAAGTCCATCTTGGGGCCGTTTATTTTGCGGCGTTTGAAATCTGATGTGATGCAGCAACTTGTTCCTAAAATACAGCAGGTTGAATATGTTGTAATGGAAAAGCAACAGGAAAATGCTTATAAGGAAGCCATTGAGGAGTATCGTGCTGTTTCACAAGCTCGGATAGCAAAATGTTCTGATCTTAATGCCAAGACTGTCCTTGAAGTTCTTCCACGAAAACAGATAAACAACTACTTTGTTCAGTTCCGCAAGATTGCAAACCATCCTTTGTTGATACGGCGAATCTACAATGATGATGATGTAATTCGCTTTGCTAGGAAGTTGCATCCAATAGGTGCTTTTGGCTTTGAATGTACTCTGGACAGAGTTATTGAGGAACTTAGAAGTTACAATGACTTTTCTATTCACCGGCTTTTGCTTCACTATGGTGTCAATGATAGAAAGGGGATCCTTCCTGAAAAGCATGTTATGCTTTCTGCAAAATGTCGGGCCTTAGCAGAACTACTTCCTTCACTAAAGAAGGATGGTCATCGTGTCTTGATCTTTAGTCAATGGACATCAATGCTTGACATTCTGGAGTGGACTTTGGATGTCATTGGGTTGACCTACAAACGGCTTGATGGAAGTACACAGGTGGCAGAAAGGCAAACTATAATCGATACGTTCAACAATGATACTTCCATATTCTCATGCTTGCTTTCCACGAGAGCTGGAGGACAAGGATTGAACTTAACAGGAGCTGACACTGTTGTAATTCATGACATGGATTTTAATCCGCAGATTGATAGGCAAGCAGAAGATCGTTGCCATAGGATTGGTCAAACTAAGCCTGTTACCATATATCGGCTGGTAACCAAGGGAACGGTTGATGAAAATGTTTATGAGATTGCTAAGAGAAAATTGGTACTTGATGCTGCTGTCCTCGAGTCCATGGAGGTGGTTAGTGAAGGCAACATGCCTGAGAAGACCATGGGAGAGATATTGTCGGCAATTTTGTTGAGTTAA 2331 0.4655 MKREFYEISDDEWDNHDDFKPSRVLKRPRSSPSPPPPIESFAYNNTSRNNNNSNPEISGGDDDDDDCVEITRNSAGFPDELDDLEDADVDDNAPAAAAAPNRGRRFIVDDDDEDDSDRDNDRDRDRDRSVAELYEIGSSSSSSEEDIGVEEEEEEEEEEEVDEGDVVGRALQKCARISAELKGELFGSSGTACERYSEVESSSVRIVTQEDVDVACGSEDSDFQPLLKPYQLVGVNFLLLLYRKGIGGAILADEMGLGKTVQAITYLTLLNHLHNDPGPHLIVCPASVLENWERELKKWCPSFSILQYHGAGRAAYCKELSSLSKAGLPPPFNVLLVCYSLFERHSAQQKDDRKVLKRWKWSCVLMDEAHALKDKNSFRWQNLMAVARNANQRLMLTGTPLQNDLHELWSLLEFLMPDIFATEGVDLKKLLNPEDRDLIGRMKSILGPFILRRLKSDVMQQLVPKIQQVEYVVMEKQQENAYKEAIEEYRAVSQARIAKCSDLNAKTVLEVLPRKQINNYFVQFRKIANHPLLIRRIYNDDDVIRFARKLHPIGAFGFECTLDRVIEELRSYNDFSIHRLLLHYGVNDRKGILPEKHVMLSAKCRALAELLPSLKKDGHRVLIFSQWTSMLDILEWTLDVIGLTYKRLDGSTQVAERQTIIDTFNNDTSIFSCLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDRCHRIGQTKPVTIYRLVTKGTVDENVYEIAKRKLVLDAAVLESMEVVSEGNMPEKTMGEILSAILLS* 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g0206 776 MobiDBLite consensus disorder prediction 145 164 - -
Dod10g0206 776 MobiDBLite consensus disorder prediction 1 25 - -
Dod10g0206 776 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 220 453 IPR027417 -
Dod10g0206 776 SMART ultradead3 223 428 IPR014001 -
Dod10g0206 776 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY A CONTAINING DEAD/H BOX 1 69 774 - -
Dod10g0206 776 MobiDBLite consensus disorder prediction 1 165 - -
Dod10g0206 776 PANTHER SNF2/RAD54 HELICASE FAMILY 69 774 - -
Dod10g0206 776 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 240 418 IPR014001 -
Dod10g0206 776 CDD DEXHc_Snf 227 420 - -
Dod10g0206 776 Gene3D - 206 478 IPR038718 -
Dod10g0206 776 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 359 757 IPR027417 -
Dod10g0206 776 Pfam Helicase conserved C-terminal domain 603 715 IPR001650 -
Dod10g0206 776 CDD SF2_C_SNF 593 726 - -
Dod10g0206 776 MobiDBLite consensus disorder prediction 40 57 - -
Dod10g0206 776 Pfam SNF2-related domain 247 533 IPR000330 GO:0005524|GO:0140658
Dod10g0206 776 Gene3D - 561 773 IPR027417 -
Dod10g0206 776 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 606 756 IPR001650 -
Dod10g0206 776 SMART helicmild6 632 715 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g0206 Dod-Chr10 6022193 6034333 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g0206 248 757 RAD5 or RAD16-like Gene Family AT5G22750 27.981 1.61e-50 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Dod10g0206 SNF2_N 3.2e-56 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g0206 K14439 - gmx:100806323 1211.05