Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g0203 ATGGCTTCCTGTAGCTTAGGAACATACAAGCGTTCTCCCACCACTGCGATCCGTTTCTTTAAGATTATTCTCAGAAAAACTCTTGGAGATGGAAATCTTAAGATACCAAACAATTTCACTAGGAAATATGGTGGTTGTCTGCAAAACCCAGTGTATCTCAACCCTCCAGATGGCACTGAGTGGAAAGTGCATTGGACTAAGCGTGATGGTGGGGTTTTGTTTGAAAAGGGTTGGAAAGAGTTTGCTACATATTACTCTCTAGATCATGGGCACTTGGTGCTGTTTGTCTACAAGGAAACTTCACATTTTGAAGTACACATATTTGGCATGAGTGGCCTTGAAATAGACTATCCTGATGATATGGTTGAGATTTTGAATGAGCCACCACCATGTAAAGGCCAGAAGAGAAGACTGAAATCACCATTGTCATCTCCTTCTACAAGTAAGAAATTGAGAACTGCCATAAGAACATGCCCCAATCTGGAAGGTACTCAATCTGAAGAGACAAAGCTTGAGATACCATCTGCCAATCAAGATTTGCATGGCAAGAACAATAGAAGAAAACAAGATTCGAAATCTCTGGTTACTCCCTTCCCTGCAACATCTAAAGCTCTGAAAGAAGCCAAGAAGTTCAAGTCAAAAAATCCCTCTTTCTTAGTCAAGATAAGGCCAAGTCATCTAACGGGGTCATATACACCGAATGTATCGATTGTCTTCTTCAGAGCGTATTTTAAAAAGAAAAAGCAGAATGTGAAGATACGGCTTGGAAGGAAGTTGTGGACTGCAAAATTGATCAGTTATCCGTTAAAGAGAAATGCCGTTATCTCCGCTGGTTGGTCCCATTTTGCTAAAGGAAGTAAATTACAAGCTGGAGATGTTTGTGTCTTTGAACTTGTTAGTAAAAAAGATCCTTTGCTTGATGTTCATATTTTTAGAGATTAG 942 0.3981 MASCSLGTYKRSPTTAIRFFKIILRKTLGDGNLKIPNNFTRKYGGCLQNPVYLNPPDGTEWKVHWTKRDGGVLFEKGWKEFATYYSLDHGHLVLFVYKETSHFEVHIFGMSGLEIDYPDDMVEILNEPPPCKGQKRRLKSPLSSPSTSKKLRTAIRTCPNLEGTQSEETKLEIPSANQDLHGKNNRRKQDSKSLVTPFPATSKALKEAKKFKSKNPSFLVKIRPSHLTGSYTPNVSIVFFRAYFKKKKQNVKIRLGRKLWTAKLISYPLKRNAVISAGWSHFAKGSKLQAGDVCVFELVSKKDPLLDVHIFRD* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g0203 313 PANTHER B3 DOMAIN-CONTAINING 13 312 - -
Dod10g0203 313 CDD B3_DNA 18 108 IPR003340 GO:0003677
Dod10g0203 313 CDD B3_DNA 216 312 IPR003340 GO:0003677
Dod10g0203 313 SUPERFAMILY DNA-binding pseudobarrel domain 211 312 IPR015300 -
Dod10g0203 313 MobiDBLite consensus disorder prediction 128 150 - -
Dod10g0203 313 ProSiteProfiles B3 DNA-binding domain profile. 18 111 IPR003340 GO:0003677
Dod10g0203 313 SUPERFAMILY DNA-binding pseudobarrel domain 16 111 IPR015300 -
Dod10g0203 313 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 13 312 - -
Dod10g0203 313 ProSiteProfiles B3 DNA-binding domain profile. 218 313 IPR003340 GO:0003677
Dod10g0203 313 Gene3D - 199 313 IPR015300 -
Dod10g0203 313 Gene3D - 12 112 IPR015300 -
Dod10g0203 313 SMART B3_2 19 111 IPR003340 GO:0003677
Dod10g0203 313 SMART B3_2 218 312 IPR003340 GO:0003677
Dod10g0203 313 MobiDBLite consensus disorder prediction 163 195 - -
Dod10g0203 313 Pfam B3 DNA binding domain 19 108 IPR003340 GO:0003677
Dod10g0203 313 Pfam B3 DNA binding domain 239 312 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g0203 Dod-Chr10 5990151 5992683 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g0203 19 312 B3 DNA Binding Superfamily AT3G18990 27.928 1.46e-29 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Dod10g0203 B3 2.7e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g0203 - - ahf:112717097 292.352