Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g0202 ATGGCTTCCTGTAGCTCCCAACCAAACAAGCAGTCTCCTGCCAGTGCGATCCGTTTCTTTAAGATTATTCTCAAAAGAGCTCTTGAAGATGGAAATCTTAAGATACCAAACAGTTTCACTAGGAAACATGGTGGTGGCCTGCAAAACCCAGTGTATCTGAACCCTCCAGATGGCACTGAGTGGAAAGTGCATTGGACTAAGCATGATGGTGGGATTTTGTTTGAAAAGGGTTGGAAAGAGTTTGCTTCATATTACTCTCTAGATCATGGGCACTTGGTGTTGTTTGAGTACAAGGAAACTTCACATTTTGAGGTATACATATTTGGCATGAGTGGCCTTGAAATAGACTATCCTGATGATACCGTTGAGATTTTGAATGAGCCACCCCCAAGTAAGGGCCAGAAGAGAAAGCAGAAATCACCATTGTCATCTCCTTCTACAAGTAAGAAATTGAGAACTGCCATAAGAACAAGCAGCTCCAATCCAGAAGGTAGTCAGTCTGAAGGGACAAGGCTTGAGACGCCATCTGCCAATCAAGACTTGCATGGCAAGAACAATCGAAGAAAACAAGATTCCAAGTCTCAGGGTAGTCCCTTCCCTACAACATCCGATGCTCTGGAAGAAGCCATGAAGTTCGACTCGGAAAATCCCTCCTTCTTGCTCAAGATAAAGCCAGGTCATGTAAAGGGTTCATATTCACCGCTCATATCAATTGTCTTCTTCAAAACGTATTTTAAAACCAACAAGCAGCAAGTGAGGATACGGTTTGGAAGGAAGTTGTGGCATGCAAGGTTGATGTATTATCCGTTAAGGTGTACTGCCGTTATTTCCGCTGGTTGGATCTATTTTGTTAAAGGAAGTAAATTACGAGCTGGAGATGTTTGTGTCTTTGAGCTTGTTAATAAGAAGGATCCTTTGCTTGATGTTCATATTTTTAGAGGTTAA 945 0.4222 MASCSSQPNKQSPASAIRFFKIILKRALEDGNLKIPNSFTRKHGGGLQNPVYLNPPDGTEWKVHWTKHDGGILFEKGWKEFASYYSLDHGHLVLFEYKETSHFEVYIFGMSGLEIDYPDDTVEILNEPPPSKGQKRKQKSPLSSPSTSKKLRTAIRTSSSNPEGSQSEGTRLETPSANQDLHGKNNRRKQDSKSQGSPFPTTSDALEEAMKFDSENPSFLLKIKPGHVKGSYSPLISIVFFKTYFKTNKQQVRIRFGRKLWHARLMYYPLRCTAVISAGWIYFVKGSKLRAGDVCVFELVNKKDPLLDVHIFRG* 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g0202 314 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 10 313 - -
Dod10g0202 314 CDD B3_DNA 217 313 IPR003340 GO:0003677
Dod10g0202 314 PANTHER B3 DOMAIN-CONTAINING 10 313 - -
Dod10g0202 314 CDD B3_DNA 18 108 IPR003340 GO:0003677
Dod10g0202 314 Gene3D - 201 314 IPR015300 -
Dod10g0202 314 SUPERFAMILY DNA-binding pseudobarrel domain 17 111 IPR015300 -
Dod10g0202 314 SMART B3_2 19 111 IPR003340 GO:0003677
Dod10g0202 314 SMART B3_2 219 313 IPR003340 GO:0003677
Dod10g0202 314 ProSiteProfiles B3 DNA-binding domain profile. 18 111 IPR003340 GO:0003677
Dod10g0202 314 ProSiteProfiles B3 DNA-binding domain profile. 261 314 IPR003340 GO:0003677
Dod10g0202 314 SUPERFAMILY DNA-binding pseudobarrel domain 213 313 IPR015300 -
Dod10g0202 314 MobiDBLite consensus disorder prediction 121 203 - -
Dod10g0202 314 MobiDBLite consensus disorder prediction 136 181 - -
Dod10g0202 314 Pfam B3 DNA binding domain 240 313 IPR003340 GO:0003677
Dod10g0202 314 Pfam B3 DNA binding domain 26 108 IPR003340 GO:0003677
Dod10g0202 314 Gene3D - 12 112 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g0202 Dod-Chr10 5983951 5986135 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g0202 19 313 B3 DNA Binding Superfamily AT3G18990 26.176 3.23e-31 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Dod10g0202 B3 2.6e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g0202 - - ahf:112717097 293.508