Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g0201 ATGAGTTCCATTTGCAAGTGGAGAAATAAGCATCCTGTGCCCTCTGCAATCCTTTTCTTTAAGATTATTCTTGGAAAAACTCTTGAAGATGGGAAGCTTATCAGTGATAAGACAGTTGAAATCTTGGATGAGATGTCTCCAAGCCGGAATACCAGACTGAAATCACCAATGTTTTCTTCTCCTCAACCATGTAAGAAACTCAGAACTGACACAGCTGGAGATGTTAGAACAAGCCACAATTTGCAAAACATGCCTCAGCTTGACCAAAGCAATGGTAATCAGTCCCAAGGGGTTAACTTTGAGAAGTCAACAACATTTGCATCTGTCAAGCAAGAATTGGATGAGGATATAAGTGGTGTCTCTCAATGTCCAAAAGTGGAGCAGTCTACTAAAGTAACTGAAGCATTTAACAGAGGCAGAACTTACAGACCTAGAAATAATCCCTCTTTCATGGTTATCATGAAACCTTCCTATGTTAATAATTATTCCATGAATGTCCCTTTAATATTTGCAGAAGGCTATTTGAAAGAAAAGCAAGGGGCTAGCCTCATTCAGGGTCAGGATGGGAGAACTTGGTCTATTATTTATAGTGCAGGAAAATTTAATTCTGGATGGAAGAGATTTGCATCAGATAATAATTTGAATGTGGGGGATATTTGTTTTTTTGAGCTGACTGATCGCAAAGTCCCTTCCTTCGAAGTATCAATATCGAGAGCCATACAAGAACCAGGTTGCACTCAAGCACAAGAAACAGATCAAGGAGATGGAGTAAATTGGTCAGACCCTGGAAGAGTTCAGTATGTTGAAGGTGAGGCTGATATTACAAGTAAAGAGTGTATCTAA 843 0.3926 MSSICKWRNKHPVPSAILFFKIILGKTLEDGKLISDKTVEILDEMSPSRNTRLKSPMFSSPQPCKKLRTDTAGDVRTSHNLQNMPQLDQSNGNQSQGVNFEKSTTFASVKQELDEDISGVSQCPKVEQSTKVTEAFNRGRTYRPRNNPSFMVIMKPSYVNNYSMNVPLIFAEGYLKEKQGASLIQGQDGRTWSIIYSAGKFNSGWKRFASDNNLNVGDICFFELTDRKVPSFEVSISRAIQEPGCTQAQETDQGDGVNWSDPGRVQYVEGEADITSKECI* 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g0201 280 Gene3D - 127 241 IPR015300 -
Dod10g0201 280 MobiDBLite consensus disorder prediction 47 98 - -
Dod10g0201 280 MobiDBLite consensus disorder prediction 47 66 - -
Dod10g0201 280 ProSiteProfiles B3 DNA-binding domain profile. 149 240 IPR003340 GO:0003677
Dod10g0201 280 SMART B3_2 150 240 IPR003340 GO:0003677
Dod10g0201 280 MobiDBLite consensus disorder prediction 74 98 - -
Dod10g0201 280 CDD B3_DNA 148 238 IPR003340 GO:0003677
Dod10g0201 280 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 35 239 - -
Dod10g0201 280 Pfam B3 DNA binding domain 150 238 IPR003340 GO:0003677
Dod10g0201 280 PANTHER B3 DOMAIN-CONTAINING 35 239 - -
Dod10g0201 280 SUPERFAMILY DNA-binding pseudobarrel domain 145 237 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g0201 Dod-Chr10 5946756 5948619 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g0201 135 238 REM Transcription Factor Family AT1G49480 38.182 2.05e-12 63.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Dod10g0201 B3 4.8e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g0201 - - adu:107471690 229.565