Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g0200 TCCTTTTCTTCAAGATTATACTTGGAAAAACTCTTGAAGATGGGAAGCTTTCCTTTGCAGAAGCTGCCAAACAGTTTCACAAGGAAACATGGTGGTGGTATGTCAAACCCAGTGTTCCTCAAGCCTCCTGATGGTACAATATGGAAAGTATGCTGGACTAAGCATGATGGTGAGATTTTTCTTGAAAGGGCTTGGGAGGAATTTGCTGCATATTACTCTCTAGATCATGGACACTTGGTGTTGTTTGAGTTCAAGGAAGCTTCTCAATTTGAGGTGCACATATTTGACATGAGTGGCCTTGAAATAAACTATCCTTTTCCTGACAACCTTGACCAGATCAGTGACAAGACTGTTGAAATTTTGGATGAGACACCTCCAAGCCAGAACATGGGACTTAAATCACCCATGTTTTCTTCACGTCAACCGTGCAAGAAACTCAGAACTGGCACAACCGGAGGTGTTAGAACCAGCAACAATTTGCAAAACATGCCCCAGATTGACCAAATTAATGGTAATCAGTCTCAGGCAGTTAACTTTGACAACAACCCAACATCTGTCAAGCAAGAATTGGATGAAACAGTTCAAGGAGATGGAGTCAATTGGTCAGACCCTGGAAGAGTTCAGTATGTTGAAGGTAAAACTGACATAACATTACAAGATCTTGTTGATGGCAGTGTTTTCATTTTACTGGTGGTGTTGATGGCAATGCCAAAGGGCTTGTTTGAAGACTGTACATTGCTTTCAAGCTCTAGGCTAAAGGGCTTGTGTACTGGTCAGAGAAACCGACCTCACTTTTTCGACCTCTTAACCTCTTCACTTGCTTCACTTGCACTCGAGCTCGAGGCTAGAGAGCTTATGTACCGATTGGGAAGATCAACCTTGGTCCTCGACTCATCGAGCCCCGTATCCCATAAACATTACCAACCATACCTGAGGGCTACCTTTAGTTTGGCATATTGTTGCAAGTTGAGAAATAAGCATCCTGTGCCCTCTGCAATCCTTTTCTTTAAGATTATTCTCGGGAAAACTCTTGAAGATGGGAAGCTTATCAATGATGAGACAGTTGAAATCATTGATGAGATGCCTCCAAGCAAGAACACCAGACAGAAATTACCAATGTTATCTTTTCCTCAAACAAGCAAGAAACTCCGAATTGGCACAACTGGAGATGTTAGAACAAGCTGCAATTTGCAAAACTTGCATCAGATTGACCAAATTAATGGTAATCAGTCTCAAGGGACAAACCTTGAGAAGTCAACATTTACATCTGTTAATAAAGAATTGGATGAAAAAGTTCAAGAAGATAGAGCCAATTGGTTTGACCCTGGAAGAGTCCAGTCAGTTGCTAGTAAGGCTGACATTACAAGTAAAGGAGCAGGGGGAGCTCGCAGCGGCGGCAACAGGGGAAGCTACAGTGTTCGCGGGGGTTCCAGCTTGGTTCGTGTGTGGGGGCTCGCTCATGCAGTGGCGGTTGGGGCTCGAGTGGGGAAGCACGGATCTGCGTGA 1506 0.4382 SFSSRLYLEKLLKMGSFPLQKLPNSFTRKHGGGMSNPVFLKPPDGTIWKVCWTKHDGEIFLERAWEEFAAYYSLDHGHLVLFEFKEASQFEVHIFDMSGLEINYPFPDNLDQISDKTVEILDETPPSQNMGLKSPMFSSRQPCKKLRTGTTGGVRTSNNLQNMPQIDQINGNQSQAVNFDNNPTSVKQELDETVQGDGVNWSDPGRVQYVEGKTDITLQDLVDGSVFILLVVLMAMPKGLFEDCTLLSSSRLKGLCTGQRNRPHFFDLLTSSLASLALELEARELMYRLGRSTLVLDSSSPVSHKHYQPYLRATFSLAYCCKLRNKHPVPSAILFFKIILGKTLEDGKLINDETVEIIDEMPPSKNTRQKLPMLSFPQTSKKLRIGTTGDVRTSCNLQNLHQIDQINGNQSQGTNLEKSTFTSVNKELDEKVQEDRANWFDPGRVQSVASKADITSKGAGGARSGGNRGSYSVRGGSSLVRVWGLAHAVAVGARVGKHGSA* 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g0200 501 SMART B3_2 11 98 IPR003340 GO:0003677
Dod10g0200 501 MobiDBLite consensus disorder prediction 450 471 - -
Dod10g0200 501 PANTHER B3 DOMAIN-CONTAINING 21 190 - -
Dod10g0200 501 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 21 190 - -
Dod10g0200 501 SUPERFAMILY DNA-binding pseudobarrel domain 20 98 IPR015300 -
Dod10g0200 501 Pfam B3 DNA binding domain 21 96 IPR003340 GO:0003677
Dod10g0200 501 CDD B3_DNA 22 96 IPR003340 GO:0003677
Dod10g0200 501 MobiDBLite consensus disorder prediction 124 160 - -
Dod10g0200 501 Gene3D - 6 99 IPR015300 -
Dod10g0200 501 ProSiteProfiles B3 DNA-binding domain profile. 5 98 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g0200 Dod-Chr10 5924076 5936494 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g0200 5 104 B3 DNA Binding Superfamily AT3G18990 35.294 1.31e-13 70.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Dod10g0200 B3 7.2e-09 CL0405