Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g0197 ATGGGAAGATTCCCAAAAGAAGAGCCTGAAAGCTGCTACAATGTCCATGCTGAAACTAAGCATGGAAAGAAGAAAGAATGTGCAGGAAACTCAGAAGTCTTGAACGATGATAGAATCAAGAAGTTTCATGAGGTAGTGAAGAACAGTTTCCACTCTGACAAGGACTTCTTCATATGTTCACTGAGAAAAACGTATACTGAGAGAGATATCTTGGTGATACCAAACGAGTTTGCCAAGCCAGTTCTGCAAGAGAAAGAAAGAGATGCTACCCTTTTTGTTGACCAGAAGATCAGAGCTTGGGATGTCAAGATGAAGAACACTAGACGACAATTTACAATTACTGGTGGTTGGAAGAAATTTTCGGTGGACAATAATTTGAAAATCGGTGATGTTTGTATTTTTGAGCTGATCAATTGCAAAGAAGTTTCATTCAGAGTTCACATTCGTCGTTTCGGAGAGGAATCAAGCACTCCTCGCTTTGAAGGTAACTTCCATGAAACTCCTATAGCTAACAGCAAATTCGTGTCCAAGAATTACTTCACCATCCAGATGAAGCATCCTTCTGCATTACATTATATGGTAATACCAATTGACTTCATCAGGAATTACACTGTACATAATGGAGAATATGCAACCCTGCTATTTGGGGAGAGATCATGGCTTGTGAAAATACTCTATTATCCCGATAATAGCTTTGCTAGATTCTCTCAAGGTTGGGCTCAATTTGTGAAGGATTGTAACTTGAAAGATCGTGATTCTTGTCGCTTTGAGATGATCGATGAGGAGAATCTTGAGTTCCAAGTTTCAATTTCAAGACCCTCTTAA 825 0.3915 MGRFPKEEPESCYNVHAETKHGKKKECAGNSEVLNDDRIKKFHEVVKNSFHSDKDFFICSLRKTYTERDILVIPNEFAKPVLQEKERDATLFVDQKIRAWDVKMKNTRRQFTITGGWKKFSVDNNLKIGDVCIFELINCKEVSFRVHIRRFGEESSTPRFEGNFHETPIANSKFVSKNYFTIQMKHPSALHYMVIPIDFIRNYTVHNGEYATLLFGERSWLVKILYYPDNSFARFSQGWAQFVKDCNLKDRDSCRFEMIDEENLEFQVSISRPS* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g0197 274 SMART B3_2 180 274 IPR003340 GO:0003677
Dod10g0197 274 SMART B3_2 56 152 IPR003340 GO:0003677
Dod10g0197 274 Pfam B3 DNA binding domain 56 150 IPR003340 GO:0003677
Dod10g0197 274 Pfam B3 DNA binding domain 182 272 IPR003340 GO:0003677
Dod10g0197 274 ProSiteProfiles B3 DNA-binding domain profile. 178 274 IPR003340 GO:0003677
Dod10g0197 274 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 171 272 - -
Dod10g0197 274 PANTHER B3 DOMAIN-CONTAINING 28 150 - -
Dod10g0197 274 SUPERFAMILY DNA-binding pseudobarrel domain 50 151 IPR015300 -
Dod10g0197 274 CDD B3_DNA 179 272 IPR003340 GO:0003677
Dod10g0197 274 SUPERFAMILY DNA-binding pseudobarrel domain 178 273 IPR015300 -
Dod10g0197 274 CDD B3_DNA 60 150 IPR003340 GO:0003677
Dod10g0197 274 ProSiteProfiles B3 DNA-binding domain profile. 56 152 IPR003340 GO:0003677
Dod10g0197 274 Gene3D - 166 273 IPR015300 -
Dod10g0197 274 Gene3D - 37 152 IPR015300 -
Dod10g0197 274 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 28 150 - -
Dod10g0197 274 PANTHER B3 DOMAIN-CONTAINING 171 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g0197 Dod-Chr10 5730616 5734925 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g0197 35 262 B3 DNA Binding Superfamily AT4G00260 22.989 4.08e-09 55.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Dod10g0197 B3 2.6e-18 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g0197 - - lang:109332968 210.69