Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g0196 ATGACAATGGGGCTTTCAAGGTTGACTATGAGAAGCAGATATGGAAATGGAAGTGTTGCTATGATGCTCCCAGAGAATTTTGTGCGAAAACATTGGGAAGGATTATCAAATCCTGTAGTTCTGAAGCTTCCAAACAACATTAAATTCAAAGTTCATTGGATTAAGCATGAGGGTAACATTAGGTTAACAGATGGTTGGACCAGATTTACAAAGATATCTTGTTTGCAGTATGGATATGTGTTACTTTTTAAATATAAAGGAAATTCCTATTTTAAAATTAGGGTGCACAACGAGAGCGCTTCAGAAATAGACTATTTAGGGTGTAATAAAAACAATTTAAAAGATGTTGGAGTTGACAATGATGACATTGAAAGGCCTACAACATTTCAGAATTATGTACGTTTCTTTAAGGTGCTTGTGCGAAGAAACTTTCAAGAAGAGCTGAGTAAGTTAGAAATAGATTATTCAAGTCTAAGACGCAATAAAGAAGCATCAAAAAATCATGAAGCAGCTATTGAAGTTATTGAAATTTCTGATGATGATTGTGATAATAAAATTGTTAATGAGAGTGAAAGAGATGCTGGGCTCGGCAAGAGAAAGAAAACACACACAGGAGGTGCTAGAAGAAGGTGTTGCAACGTTGGGTCAACTTCAGAAATCATTCATTGCCGCAAAGCGTCAGAGAAAGCAGAGGCTTTCCAATCAAACTTACAAAATCCTTCATTTGTCCGAGAAATGAGGCCGTCATATGTCAAAAACGATTTGTTGCGTTTACCAAGTCCGTTCTCGAGATTCAACTCGCAAGGTTCTGAAGGAATGGCCACAATAAGAGTTTCCAGCGATATGGCTTGGCCGGTTAAGTGGAGAATTGAGAATTCCAGTGGTGTTGACAGAGCTGTTATCAATGGTGGGTGGAAGCCATTTTGTGAGAAATATGATCTAAGAGTTGGAGATGTTTGCGTGTTTGAGAGAATCGAAGTCGCACCACTCTCCTTCCTAATCAATATCGTTCGAGCCCGAGAAGAACCAAGCTCTGATGACCAGCATTTGCAAGAGTCTGGGAGTTCCAATATGGAGGCCAATCAATTCAAGATTCAGATAAAAAAATCTCACCTGATGCCAACTCTTGTGTTCATACCAGCGGAATTTAGGAAAAGGCATAGGGAAATTCTTGGAAAAGAAGTGAATTTGCAAGCTGGGGAAATGTCGTGGCCTGTAAAAGTGTTACCTCGTGGTGCCTTTTCTAAAGGTTGGCCTGCATTTGTGAGAGGCTGCAAATTACACGTTGGTGATGTTTGTCTATTTCAGATTATTGATGAAGGGAATCTGGTGTTCAAAGTTTTAATACAGCAGCATTGA 1359 0.3915 MTMGLSRLTMRSRYGNGSVAMMLPENFVRKHWEGLSNPVVLKLPNNIKFKVHWIKHEGNIRLTDGWTRFTKISCLQYGYVLLFKYKGNSYFKIRVHNESASEIDYLGCNKNNLKDVGVDNDDIERPTTFQNYVRFFKVLVRRNFQEELSKLEIDYSSLRRNKEASKNHEAAIEVIEISDDDCDNKIVNESERDAGLGKRKKTHTGGARRRCCNVGSTSEIIHCRKASEKAEAFQSNLQNPSFVREMRPSYVKNDLLRLPSPFSRFNSQGSEGMATIRVSSDMAWPVKWRIENSSGVDRAVINGGWKPFCEKYDLRVGDVCVFERIEVAPLSFLINIVRAREEPSSDDQHLQESGSSNMEANQFKIQIKKSHLMPTLVFIPAEFRKRHREILGKEVNLQAGEMSWPVKVLPRGAFSKGWPAFVRGCKLHVGDVCLFQIIDEGNLVFKVLIQQH* 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g0196 452 Coils Coil 141 168 - -
Dod10g0196 452 Gene3D - 222 342 IPR015300 -
Dod10g0196 452 Gene3D - 344 452 IPR015300 -
Dod10g0196 452 ProSiteProfiles B3 DNA-binding domain profile. 6 99 IPR003340 GO:0003677
Dod10g0196 452 CDD B3_DNA 240 338 IPR003340 GO:0003677
Dod10g0196 452 Gene3D - 7 100 IPR015300 -
Dod10g0196 452 ProSiteProfiles B3 DNA-binding domain profile. 241 340 IPR003340 GO:0003677
Dod10g0196 452 PANTHER B3 DOMAIN-CONTAINING 339 450 - -
Dod10g0196 452 PANTHER B3 DOMAIN-CONTAINING 21 339 - -
Dod10g0196 452 SMART B3_2 363 451 IPR003340 GO:0003677
Dod10g0196 452 SMART B3_2 242 340 IPR003340 GO:0003677
Dod10g0196 452 SMART B3_2 5 99 IPR003340 GO:0003677
Dod10g0196 452 CDD B3_DNA 363 449 IPR003340 GO:0003677
Dod10g0196 452 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 339 450 - -
Dod10g0196 452 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 21 339 - -
Dod10g0196 452 CDD B3_DNA 9 97 IPR003340 GO:0003677
Dod10g0196 452 ProSiteProfiles B3 DNA-binding domain profile. 362 452 IPR003340 GO:0003677
Dod10g0196 452 Pfam B3 DNA binding domain 245 338 IPR003340 GO:0003677
Dod10g0196 452 Pfam B3 DNA binding domain 16 96 IPR003340 GO:0003677
Dod10g0196 452 Pfam B3 DNA binding domain 364 447 IPR003340 GO:0003677
Dod10g0196 452 SUPERFAMILY DNA-binding pseudobarrel domain 357 449 IPR015300 -
Dod10g0196 452 SUPERFAMILY DNA-binding pseudobarrel domain 235 335 IPR015300 -
Dod10g0196 452 SUPERFAMILY DNA-binding pseudobarrel domain 19 97 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g0196 Dod-Chr10 5719184 5724848 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g0196 363 447 B3 DNA Binding Superfamily AT3G18990 29.213 1.58e-07 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Dod10g0196 B3 2.4e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g0196 - - aip:107621190 244.202