Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g0096 ATGTCTATACAACATGGAAATTCTAATGTCAAAGGCGTATCAGGCTCAAGATCTTGCCTTTATGATCTCTTCTGCTCTGAAACACCAAGTTTGAATACTCAAAGTCAGAGAGATCAATGGCTGTCTTCTGGTCCACAGGAAAGGCTAGACAATCTGATGCGTCAAGAAGGGAACAAGTTTTGTGCTGATTGTGGGTCATCAGAGCCAAAATGGGTATCTTCAAGTCTTGGGGTGTTTATTTGCATCAAATGCTCTGGAATACATAGAAGCTTAGGAGTCCATATATCAAAGGTTGTATCACTGAAACTAGATCAATGGACAGATGAACAAGTTGATGCACTGGTGAAAATGGGTGGAAATACAATAGTCAATAAGAAGTATGAAGCTTGCCTCCCAAGTTACATAAAAAAACCAAGACCGCATTCTTCCATTGACGAGCGCTCAGATTTTATCAGAAGAAAATATGAGATGCAACAGTTTTTGGATAGTGAGGAGCAGTTGTCATGCCCCTATGTACCTTCTCAAGGAAGAAGTTTATCATCCAATCAGAGTAGTTCCTCATCCAGCAATTTTCCTGCAGACAAAGGACATTATGAAAAACAACCAACCAAAAGTCGTATTGGGCATGCGATACGAAACAGCTGGGGAAGAAAAGACTCTGAGCATAAGATTTCAAAGAGGGGCCATTCATTGGCAGGTATGGTTGAATTTGTTGGGTTGATCAAGGTTAATGTGGTAAAAGGTAAAAATCTGGCTGTCCGAGATGTAATGACTAGTGACCCTTATGTCATGCTTTCTCTTGGTCACCAATCAGTGAAGACGCGTGTCATCAAGAACAATTTGAATCCAGTCTGGAATCAAAGCCTAATGCTGTCAATTCCAGAGAGCATTCCTCCTCTTAAAGTGGTTGTGTATGACAAGGATACTTTCTCAACTGATGATTTTATGGGTGAGGCTGAAATAGACATTCAACCTCTAGTCACAGCCGCAAAGGCGTATGAGAAATCTTCAATCAATGAGCCAATGCAGCTTGGGAAATGGGTAGCAAGTGGTGACAACACTCTTGTTAAAGATGGTATCATTACCCTTGAAGAAGGGAAGGTCAAACAAGAGATCCAGTTGAGGCTGCAGAATGTTGAGAGAGGTATGCTGGAGATTGACCTTGAATGTGTTCCTCTCACTCAATAG 1188 0.4133 MSIQHGNSNVKGVSGSRSCLYDLFCSETPSLNTQSQRDQWLSSGPQERLDNLMRQEGNKFCADCGSSEPKWVSSSLGVFICIKCSGIHRSLGVHISKVVSLKLDQWTDEQVDALVKMGGNTIVNKKYEACLPSYIKKPRPHSSIDERSDFIRRKYEMQQFLDSEEQLSCPYVPSQGRSLSSNQSSSSSSNFPADKGHYEKQPTKSRIGHAIRNSWGRKDSEHKISKRGHSLAGMVEFVGLIKVNVVKGKNLAVRDVMTSDPYVMLSLGHQSVKTRVIKNNLNPVWNQSLMLSIPESIPPLKVVVYDKDTFSTDDFMGEAEIDIQPLVTAAKAYEKSSINEPMQLGKWVASGDNTLVKDGIITLEEGKVKQEIQLRLQNVERGMLEIDLECVPLTQ* 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g0096 395 SUPERFAMILY ArfGap/RecO-like zinc finger 46 161 IPR037278 -
Dod10g0096 395 CDD C2_ArfGAP 238 382 - -
Dod10g0096 395 ProSiteProfiles ARF GTPase-activating proteins domain profile. 46 168 IPR001164 GO:0005096
Dod10g0096 395 SMART arf_gap_3 47 168 IPR001164 GO:0005096
Dod10g0096 395 MobiDBLite consensus disorder prediction 197 222 - -
Dod10g0096 395 CDD ArfGap 49 155 - -
Dod10g0096 395 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 236 330 IPR035892 -
Dod10g0096 395 Pfam Putative GTPase activating protein for Arf 47 162 IPR001164 GO:0005096
Dod10g0096 395 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 1 395 IPR044518 GO:0005096|GO:0005543
Dod10g0096 395 MobiDBLite consensus disorder prediction 172 194 - -
Dod10g0096 395 Gene3D Arf GTPase activating protein 28 169 IPR038508 -
Dod10g0096 395 Gene3D C2 domain 238 392 IPR035892 -
Dod10g0096 395 ProSiteProfiles C2 domain profile. 218 337 IPR000008 -
Dod10g0096 395 PANTHER CALCIUM-DEPENDENT ARF-TYPE GTPASE ACTIVATING FAMILY PROTEIN 1 395 - -
Dod10g0096 395 Pfam C2 domain 240 329 IPR000008 -
Dod10g0096 395 SMART C2_3c 240 335 IPR000008 -
Dod10g0096 395 MobiDBLite consensus disorder prediction 172 222 - -
Dod10g0096 395 PRINTS HIV Rev interacting protein signature 77 94 IPR001164 GO:0005096
Dod10g0096 395 PRINTS HIV Rev interacting protein signature 58 77 IPR001164 GO:0005096
Dod10g0096 395 PRINTS HIV Rev interacting protein signature 98 119 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g0096 Dod-Chr10 3719466 3726451 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g0096 46 395 C2H2 Transcription Factor Family AT4G05330 49.143 1.72e-119 348
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g0096 K12486 - gmx:100799376 644.425