Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g0087 ATGTTCGCGGACGGTTTATTCTCCGACCACAAGCTCTGCGGTTTCTTGTGTGCGGTTCTTACAGTCACTCCCCCGCCGCAGCAACCGAACCCCTCCGGTTCCACTCCATCGTTCAACGACCGATGCGAGATATCCGGCGACGGGTTCCGGTCCCGAAACGGCGTCGTTTTGGCCCCGGTGTGCGCTGCCTCCAATTCGGGGCAATGCGCAGAAGAGAGTGGTGGGGACGCGAAGGCGAGGAGGACGAGGAAGGTTGGGGCGGTGAACGGGAGCATCAGCGTGGTTCACCAGCTTCACGCGCTGGTGACCCGCAACTGCTTGAAGAGTGATGCTCGAGTGGTGTGTGTGGATCATGTGGGAGAGAGAGGAGGGTGTGGTGAGGCCAGGGCGGTCGTCCTGGTTGATGTCTATGTTCCAATTGAGCTGTGGAGTGGCTGGCAGTTCCCGAAATCCGGCGCCGTTGCCGGCGCACTCTTTCGCCACTTGAGCTGTGATTGGGACGAGAGACGTTCAATGCTTTCTTCTCCAGACTATTTTAGAAAGACTTGTGGTGCAAGTGAGAGCATTTGGAACCTTTCTGACTGTCATGTACTTGGTTGCAAGCTCCATTACCTTGTGAGCAACTCTTCAAAGAAAAGGCTATTTGAACTTCATGAAATATTTAAGATGGTACCTGGTGTAGGAAAACAGCAGAAGTCTAATAGGTCCAGGATAACCCCTATGGATAACACTTCGAGATCCGGGATTTGGGTGATATCTGATGATATCTTAACAAAAATTTTAGCTTCCCTGCGCCCAATGGATCTCACTAGGGTATCTGCAACGTGTCGTCATCTAAGATCCTTGGCTGCTTCAGTAATGCCTTGTACAAAACTAAATCTCTTTCCTCATCAGCAGACTGCAGTTGAGTGGATGTTGCATCGTGAGCGAAATGCTGAACTCTTGCCACATCCTTTGTATGTTAGTCTCTTAACTGAAGATGGTTTTCGTTTTCATGTAAATACTGTATCTGGTGAAATAGTTTCTGGGGAAGCTCCCACGATCAAGGATTTTCGTGGAGGAATGTTCTGTGATGAGCCTGGCTTGGGTAAGACTGTAACAGCTCTCTCTCTTATTGTGAAGACACAAGGTACATTGGCAGACCCACCAGATGGGGCACAGGTAGTCTGGTGTCAACATAATGGTAACCAGAAATGTGGCTATTACGAGATCAGCATTAATAACATAACTGGTTTTAGTTTGTTGGGTAAGAGGGATGTGTGCCAAGATGATGCTAGTAAGAATAATGAGAACCATGATTACTCATCAAAAAGAGCCCGTTTGATGGGTCCTGATGAGAAAATTACTACATGTTCTGCAGGAGCTATGAAATCACCTGTAGATGAATGCTCTAGGGAATTTATGTCTGAAACTCGATGCACTAGGAGCTTCAGTCACACAAAGAAAAATCTAAATTTCACATATGAAGAGGATGGCTTAATTTTCAAGGAAAGAAAAGTTGGTGAAAGATCAATAAAAACAAAGCATGCGTCAGATTTTGCATCACATCTATCTCAAAACAAGGTGGTTGATGCTTCATATGGATGTGGAAAAAGTTATAAGTCTCCTGGGAAGCCTAAAGTCGAATGTTTGGTGTACAATGAGACATGGATTCAGTGTGATGCTTGTCGCAAGTGGCGAAAGCTTACAGACAATAGTATGGCTAATTCTAGTGCAGCATGGTTTTGTAGTATGAACACTGATCCTTTATATCAGAGTTGTAGTGTCCCGGAACAATATTTTCAGAAAAGCTGTAAGATAACCTACTTGCCAGGGTTTCACATGAAAGGAACGCTTGGGGGTGAGAAAGAAAATGTTTCATTTTTTATTAGTGTGCTTAAGGAGCACAATACATTGATAAATTCTCAGACAAAGAAGGCTCTGAGTTGGTTGGTTAATATTTCAACTGAGAAGCTTGCAGAAATGGAAACAACTGGCATACGGGGTCCTATTTTAAACACTTCCAGTATGTCTAATGGATATTTTAATGCGTTCCACAAAATATTTCAAGCATTTGGCCTCTTAAAGAGAGTAGATAAAGGTGTATGCCGGTGGTACTACCCACAAAATCTTAACAATTTGACTTTTGATGTGGCAGCCCTTGGCATGGCTCTCCACAAGCCATTAGACTTTGTGAGGCTGTACTTGTCAAGAGCAACCCTGATAGTTGTTCCAGCAAATTTGGTTGATCATTGGAAAACACAAATAGAAAAGCATGTAAGACCTGGTCAATTGCGGGTATATGTTTGGATTGATCATCGGAAGCTATCTGCACACTGTCTAGCTTGGGATTATGATATTGTCATAACTACCTTTAGTCGTCTGAGTGCAGAGTGGAACCCACGAAAGAGGAGTGTTTTGATGCAAGTGCATTGGTTTAGAATAATTTTAGATGAAGGGCACACTCTTGGCTCAAGCCTGAATTTAACAAACAAGTTGCAAATGGCTATTTCATTGATGGCTTCAAATCGTTGGATACTAACAGGTACTCCAACTCCTAACACTCCTAACAGCCAACTCCTACATCTACAACCCCTGCTAAGGTTCCTTCATGAAGAAGCTTACGGACTGAATCAGAAGTCATGGGAAGCTGGCATCCTTAGGCCATTTGAGGCAGAGATGGAAGAAGGAAGGTCTCGTTTGTTGCATTTACTTCACAAATGCATGATTAGCGCAAGAAAGATAGATTTGCAAAGCATTCCGCCATGCATCAAGAAAGTTGTTTTTCTGGATTTCAATGAGGAGCATGCCAGAAGTTACAATGAATTGGTACTCACTGTTCGGCGTAATATATTGATGGCTGATTGGAATGATCCTTCACATGTTGAGAGCCTTTTGAATCCAAAACAGTGGAAATTTCGAAGTGCAACTATAAAAAATGTCAGGCTCTCATGCTGTGTTTCTGGACATATTAAAGTTACACATGCTGGAGAAGATATTCAGGAAACAATGGATATGTTAACACAAAGTGGTCTTGATCCTACTTCAGCAGAGTATAGCTCTATAAGATATAGTCTCCTGTTTGGTGGTCATTGTGTCAGATGCAAGGAGTGGTGCCGCCTTCCTCTCATTACTCCGTGTCGGCATATGTTATGTCTTGCTTGTGTTTCTTTGGACAATACGAAGTGTACGTATCCTGGATGTGATAAATTATATGAGATGCAGAGTCCTGATACACTAGCCAGACCAGAAAATCCTAACCCAAAGTGGCCTGTACCCAAAGATCTCATTGAGCTACAACCTTCATATAAGCAGGATAATTGGGATCCAGATTGGCAATCAACATCTAGTAGCAAAGTCTCCTATGTTGTCCAGAGATTGAAAGCTTTGCAAGAAAGCAATGAGCAGATGAGTTTCTACAAAGACAATAGCAATGATGAGACAGATACTGAGACTATTTTCCCTTTGCATTTGAGAGATGGGAGATCATCGTTCCAGGAATGTTCTGTGAGAAGCACTAAGACCAATATGAACCCTGACAAAGTTCTGATATTTTCTCAATTTCTTGAGCATATACATGTCATTGAACAGCAGTTGACTATTGCTGGTATCAAATATGCTGGCATGTATAGCCCAATGCATTCAAGCAGCAAGAAGAAGTCATTAGACATGTTCCAGCATGATTCAAGTTGTATGGCACTTGTGATGGATGGTAGTGCTGCATTGGGTCTTGACTTGAGTTTCGTTACACATGTTTTTTTAATGGAGCCAATTTGGGACAGAAGTATGGAGGAGCAAGTAATTAGTCGTGCCCATCGTATGGGTGCTTCTCGTCCTATTCATGTGGAAACTTTGGCAATGCATGGTACGATTGAAGAGCAAATGATGGAGTTTTTACAGGATGCTGATAAATGTAGAAGATTTTCCTGTCAAGATGTTCCCAAATCTAAAGATGATGGTGGTGGCCGAGGATATCGATCATTGCATGATTTTGCTGAAAGCAGCTATCTACTGAAACTTGGATTTGTGTATACTAATCCAGAAACCCTTAAAGGTTTGTGCACAGTTGTTTTTCCACAACTGTTTTTGTATGGAAACAAAATTTCAAAAGTAAGAGCCAAGTTGAATGAAAATTAA 4116 0.4276 MFADGLFSDHKLCGFLCAVLTVTPPPQQPNPSGSTPSFNDRCEISGDGFRSRNGVVLAPVCAASNSGQCAEESGGDAKARRTRKVGAVNGSISVVHQLHALVTRNCLKSDARVVCVDHVGERGGCGEARAVVLVDVYVPIELWSGWQFPKSGAVAGALFRHLSCDWDERRSMLSSPDYFRKTCGASESIWNLSDCHVLGCKLHYLVSNSSKKRLFELHEIFKMVPGVGKQQKSNRSRITPMDNTSRSGIWVISDDILTKILASLRPMDLTRVSATCRHLRSLAASVMPCTKLNLFPHQQTAVEWMLHRERNAELLPHPLYVSLLTEDGFRFHVNTVSGEIVSGEAPTIKDFRGGMFCDEPGLGKTVTALSLIVKTQGTLADPPDGAQVVWCQHNGNQKCGYYEISINNITGFSLLGKRDVCQDDASKNNENHDYSSKRARLMGPDEKITTCSAGAMKSPVDECSREFMSETRCTRSFSHTKKNLNFTYEEDGLIFKERKVGERSIKTKHASDFASHLSQNKVVDASYGCGKSYKSPGKPKVECLVYNETWIQCDACRKWRKLTDNSMANSSAAWFCSMNTDPLYQSCSVPEQYFQKSCKITYLPGFHMKGTLGGEKENVSFFISVLKEHNTLINSQTKKALSWLVNISTEKLAEMETTGIRGPILNTSSMSNGYFNAFHKIFQAFGLLKRVDKGVCRWYYPQNLNNLTFDVAALGMALHKPLDFVRLYLSRATLIVVPANLVDHWKTQIEKHVRPGQLRVYVWIDHRKLSAHCLAWDYDIVITTFSRLSAEWNPRKRSVLMQVHWFRIILDEGHTLGSSLNLTNKLQMAISLMASNRWILTGTPTPNTPNSQLLHLQPLLRFLHEEAYGLNQKSWEAGILRPFEAEMEEGRSRLLHLLHKCMISARKIDLQSIPPCIKKVVFLDFNEEHARSYNELVLTVRRNILMADWNDPSHVESLLNPKQWKFRSATIKNVRLSCCVSGHIKVTHAGEDIQETMDMLTQSGLDPTSAEYSSIRYSLLFGGHCVRCKEWCRLPLITPCRHMLCLACVSLDNTKCTYPGCDKLYEMQSPDTLARPENPNPKWPVPKDLIELQPSYKQDNWDPDWQSTSSSKVSYVVQRLKALQESNEQMSFYKDNSNDETDTETIFPLHLRDGRSSFQECSVRSTKTNMNPDKVLIFSQFLEHIHVIEQQLTIAGIKYAGMYSPMHSSSKKKSLDMFQHDSSCMALVMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGASRPIHVETLAMHGTIEEQMMEFLQDADKCRRFSCQDVPKSKDDGGGRGYRSLHDFAESSYLLKLGFVYTNPETLKGLCTVVFPQLFLYGNKISKVRAKLNEN* 1372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g0087 1371 ProSiteProfiles Zinc finger CW-type profile. 544 595 IPR011124 GO:0008270
Dod10g0087 1371 SMART helicmild6 1186 1268 IPR001650 -
Dod10g0087 1371 SUPERFAMILY F-box domain 243 285 IPR036047 GO:0005515
Dod10g0087 1371 CDD DEXDc_SHPRH-like 726 903 - -
Dod10g0087 1371 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1162 1314 IPR001650 -
Dod10g0087 1371 PANTHER OS01G0952200 PROTEIN 54 1327 - -
Dod10g0087 1371 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 286 375 IPR027417 -
Dod10g0087 1371 ProSitePatterns Zinc finger RING-type signature. 1040 1049 IPR017907 -
Dod10g0087 1371 Gene3D - 545 593 - -
Dod10g0087 1371 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 729 901 IPR027417 -
Dod10g0087 1371 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 54 1327 - -
Dod10g0087 1371 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 804 1310 IPR027417 -
Dod10g0087 1371 Pfam Helicase conserved C-terminal domain 1167 1268 IPR001650 -
Dod10g0087 1371 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 701 862 IPR014001 -
Dod10g0087 1371 CDD SF2_C_SNF 1163 1278 - -
Dod10g0087 1371 Gene3D - 708 906 IPR038718 -
Dod10g0087 1371 Pfam CW-type Zinc Finger 549 592 IPR011124 GO:0008270
Dod10g0087 1371 SMART ultradead3 290 873 IPR014001 -
Dod10g0087 1371 Pfam SNF2-related domain 297 960 IPR000330 GO:0005524|GO:0140658
Dod10g0087 1371 Gene3D - 1073 1312 IPR027417 -
Dod10g0087 1371 SMART fbox_2 252 292 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g0087 Dod-Chr10 3508730 3517401 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g0087 732 1288 RAD5 or RAD16-like Gene Family AT5G22750 24.958 1.11e-39 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Dod10g0087 SNF2_N 8.7e-98 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g0087 - - adu:107471940 2261.88