Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g0082 ATGAGCATGTTAGGCCTTAGAGACCTAGTACTCATAGCTCCAACACCTTCTTCCGTGCACCAAAACCACCACCACCACCACCACCAGCAACAGGGCCAACCCATTGCAGCAGACCACAACGGTAGTTCCAACCTCCCTCTTCCTTCATTAGGCTCTCTCAGCGTTGGCTTTGGCATTTTCCCACTCCTTACAGCCACACCTTGCGTGCCTCAACAGAACATCAATGAGGTCCAAGATCAGTGTGGCACCAACAACAACACCAACTACTGGAACCTCAAGATGTGCCCTGAAAAGGAAGATGATGAGAGCCGCAGGGTTGTGATGATGGAGGGCGATCAGGAAAATGGGGTCTCTGGGGGTGACTTCAGGGTGTGTCAAGACTGTGGCAACAGGGCAAAGAAAGACTGCGTGTATAGAAGGTGCAGGACTTGTTGCAAGGGGCGTGGGTATGACTGCAATACTCACGTGAAGAGCACGTGGGTCCCGGCAGTTCGACGGCGGGAGCGGCAGATGGTGATGGGTGCCGGTAATAGTGGCGGCGGCGGCTGTGGTGGTGGTGGTGGTGGTGGTGATTCTCCTGGAGCTAAGAGGCCAAGAGCTTTGGGGTCATCACATAATGCCACTGCCACCTCTCATAGCTCCAACTCTAATGCCACCACTCCAAAGAGCTTAGATACTAGCTCTTGTCACCAAGATGCTGGCTTCAAACAGTCTTTACCAGGTCATGTTCGTGCACCTGCTGTATTCAGGTGCCATAGGGTCTCGGCTATTGGCAATGGCGAAAATGAATTTGCCTACTTGGCCACGGTGCATATTAGTGGCCATGTGTTCAAGGGGTTTCTCTATGACCATGGTGTTGAAGGGAAAAATGCAATGCCCTGTGCTTCAGAACTTCAACTGGGAAACAGTTGCAGTGGAAAAAACAAGGAATGTTCTTCTGCAATTGGGGTTCCAGCCAATAATGTCTACTCTGCTGCTGCTAGCTAG 987 0.5177 MSMLGLRDLVLIAPTPSSVHQNHHHHHHQQQGQPIAADHNGSSNLPLPSLGSLSVGFGIFPLLTATPCVPQQNINEVQDQCGTNNNTNYWNLKMCPEKEDDESRRVVMMEGDQENGVSGGDFRVCQDCGNRAKKDCVYRRCRTCCKGRGYDCNTHVKSTWVPAVRRRERQMVMGAGNSGGGGCGGGGGGGDSPGAKRPRALGSSHNATATSHSSNSNATTPKSLDTSSCHQDAGFKQSLPGHVRAPAVFRCHRVSAIGNGENEFAYLATVHISGHVFKGFLYDHGVEGKNAMPCASELQLGNSCSGKNKECSSAIGVPANNVYSAAAS* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g0082 328 PANTHER LRP1 CARBOXY-TERMINAL DOMAIN PROTEIN 2 325 - -
Dod10g0082 328 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 239 286 IPR006511 -
Dod10g0082 328 MobiDBLite consensus disorder prediction 203 231 - -
Dod10g0082 328 MobiDBLite consensus disorder prediction 17 43 - -
Dod10g0082 328 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 124 166 IPR006510 -
Dod10g0082 328 Pfam Domain of unknown function (DUF702) 124 287 - -
Dod10g0082 328 MobiDBLite consensus disorder prediction 173 231 - -
Dod10g0082 328 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 2 325 IPR007818 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g0082 Dod-Chr10 3257431 3262921 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g0082 1 323 C2H2 Transcription Factor Family AT5G12330 42.136 8.14e-67 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Dod10g0082 DUF702 1.6e-56 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g0082 - - gmx:100806835 422.935