Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Dod10g0070 | ATGCACTCGAATTCTTGTTATACCCTTATTAGTTTTTCTATTTCCACAAATACCCCCTTGCACGTGAGACTTAAAAAGACCAAAACGGTGAATGAAACCCTACCAACTCTTCACTTGGCTCTCCTCTCAGACTTGTCTTGCGGCGCCGCTCTCAAACCCTACACCCACCATTCGCTCTCTCTCTTCTCTCCTTTCCCCCGCTCTCTCACTCTCACACTCAGTCTCGTATCTTCATCTCACATCCCTCATCCTTCGCCGCCAGCCACCGCCACGTCACAGCCTCATCTTCTTCCGCCGCGCATCCCTGCCGTCGTATCGATGTCTGAGATAAAGATGGACAAACCCGTGGAAATTGATAAAAGACCCATTTTCAGAGATATCAGATGCTATTTCTGTGAATACTGTGGCATCTGCAGGTCCAAAAAGACCTTAATTACCTCTCATATCAATTCACACCACAAGGAGGAGGCGGAAAAAGATAGAGCTGAACGAAATAATGAAGCACAGCATGTAAAACCCGACAACACTTGCCAGGAATGTGGTGCTAGATTCAAAAAGCGTGCCTACTTGTTGCAGCACATGCAAAGCCATTCACTTGAGAGGCCATATGTGTGTACTATTGATGATTGTCAGGCAAGTTACAGAAGAAAGGACCACTTGACTCGTCACCTTCTACAGCATGAAGGGAAAACTTTTAAATGTCCAATTGAGAGTTGCAACCTCAACTTCTCTTTACAGGGCAATATGAAAAGACATGTCAAGGAGATTCATGATGAGGAATCTACAAATGTTGAAAGTCAAAAGCAGTTTGTGTGCCCAGAAGTTGGGTGTGGAAAGGTTTTCAGGTTTGCATCAAAGCTTCAAAAGCATGAAAATTCTCATGTAAAGCTGGAGTCGGTAGGTGCAGTGTGCTTAGAGCCTGGTTGTATGAAACATTTCAGTAATGACCAGTGCCTTAAAGCCCATATTGAATCCTGCCATCAACATCTGACCTGTGATACTTGTGGTAGCAAGCAACTTAAGAAGAATATTAAAAGGCACCTTCGCACACATGAAGCTGAAGGATCATTAGAGGTGTTTCAATGTGAATTTAAGGGCTGTAGCTGTACATTCTCAAGTAAATCTAATCTTCATACGCATGAGAAGGCTGTGCACTTCAAAGAAAAGCCTTATGTGTGTGGCTTTCCTGATTGTGGCATGAGATTTGCCTACAAACATGTGAGAGATAACCATGAAAAAACTGCCAAACATGTTTTTACCCATGGAGATTTTGAAGAAGCTGATGAACAATTCAGGTCAAGGCCAAGGGGTGGGAGGAAGAGAAAGTGTCCTACTGTTGAAATGTTAGTTAGGAAGAGAGTTACCCCACCTAGTCAAATGGAGAACTGGTTCTTTATGCAGGATAGTGAGGAGATGGATTGA | 1422 | 0.4353 | MHSNSCYTLISFSISTNTPLHVRLKKTKTVNETLPTLHLALLSDLSCGAALKPYTHHSLSLFSPFPRSLTLTLSLVSSSHIPHPSPPATATSQPHLLPPRIPAVVSMSEIKMDKPVEIDKRPIFRDIRCYFCEYCGICRSKKTLITSHINSHHKEEAEKDRAERNNEAQHVKPDNTCQECGARFKKRAYLLQHMQSHSLERPYVCTIDDCQASYRRKDHLTRHLLQHEGKTFKCPIESCNLNFSLQGNMKRHVKEIHDEESTNVESQKQFVCPEVGCGKVFRFASKLQKHENSHVKLESVGAVCLEPGCMKHFSNDQCLKAHIESCHQHLTCDTCGSKQLKKNIKRHLRTHEAEGSLEVFQCEFKGCSCTFSSKSNLHTHEKAVHFKEKPYVCGFPDCGMRFAYKHVRDNHEKTAKHVFTHGDFEEADEQFRSRPRGGRKRKCPTVEMLVRKRVTPPSQMENWFFMQDSEEMD* | 474 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Dod10g0070 | 473 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 177 | 197 | IPR013087 | - | |
| Dod10g0070 | 473 | SUPERFAMILY | beta-beta-alpha zinc fingers | 341 | 399 | IPR036236 | - | |
| Dod10g0070 | 473 | Pfam | Zinc finger, C2H2 type | 203 | 227 | IPR013087 | - | |
| Dod10g0070 | 473 | Pfam | Zinc finger, C2H2 type | 270 | 294 | IPR013087 | - | |
| Dod10g0070 | 473 | Pfam | Zinc finger, C2H2 type | 176 | 197 | IPR013087 | - | |
| Dod10g0070 | 473 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 360 | 390 | IPR013087 | - | |
| Dod10g0070 | 473 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 130 | 157 | IPR013087 | - | |
| Dod10g0070 | 473 | SUPERFAMILY | beta-beta-alpha zinc fingers | 184 | 235 | IPR036236 | - | |
| Dod10g0070 | 473 | Gene3D | Classic Zinc Finger | 388 | 414 | - | - | |
| Dod10g0070 | 473 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 393 | 417 | IPR013087 | - | |
| Dod10g0070 | 473 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 270 | 299 | IPR013087 | - | |
| Dod10g0070 | 473 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 272 | 294 | IPR013087 | - | |
| Dod10g0070 | 473 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 304 | 327 | IPR013087 | - | |
| Dod10g0070 | 473 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 232 | 262 | IPR013087 | - | |
| Dod10g0070 | 473 | SMART | c2h2final6 | 391 | 417 | IPR013087 | - | |
| Dod10g0070 | 473 | SMART | c2h2final6 | 330 | 351 | IPR013087 | - | |
| Dod10g0070 | 473 | SMART | c2h2final6 | 270 | 294 | IPR013087 | - | |
| Dod10g0070 | 473 | SMART | c2h2final6 | 360 | 385 | IPR013087 | - | |
| Dod10g0070 | 473 | SMART | c2h2final6 | 232 | 257 | IPR013087 | - | |
| Dod10g0070 | 473 | SMART | c2h2final6 | 302 | 327 | IPR013087 | - | |
| Dod10g0070 | 473 | SMART | c2h2final6 | 203 | 227 | IPR013087 | - | |
| Dod10g0070 | 473 | SMART | c2h2final6 | 175 | 197 | IPR013087 | - | |
| Dod10g0070 | 473 | SMART | c2h2final6 | 130 | 152 | IPR013087 | - | |
| Dod10g0070 | 473 | SUPERFAMILY | beta-beta-alpha zinc fingers | 267 | 296 | IPR036236 | - | |
| Dod10g0070 | 473 | Gene3D | Classic Zinc Finger | 268 | 294 | - | - | |
| Dod10g0070 | 473 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 234 | 257 | IPR013087 | - | |
| Dod10g0070 | 473 | PANTHER | - | 104 | 459 | - | - | |
| Dod10g0070 | 473 | Gene3D | Classic Zinc Finger | 328 | 387 | - | - | |
| Dod10g0070 | 473 | Gene3D | Classic Zinc Finger | 203 | 228 | - | - | |
| Dod10g0070 | 473 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 175 | 202 | IPR013087 | - | |
| Dod10g0070 | 473 | PANTHER | ZINC FINGER PROTEIN | 104 | 459 | - | - | |
| Dod10g0070 | 473 | Gene3D | Classic Zinc Finger | 120 | 202 | - | - | |
| Dod10g0070 | 473 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 362 | 385 | IPR013087 | - | |
| Dod10g0070 | 473 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 203 | 232 | IPR013087 | - | |
| Dod10g0070 | 473 | SUPERFAMILY | beta-beta-alpha zinc fingers | 230 | 258 | IPR036236 | - | |
| Dod10g0070 | 473 | Gene3D | Classic Zinc Finger | 229 | 267 | - | - | |
| Dod10g0070 | 473 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 205 | 227 | IPR013087 | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Dod10g0070 | 199 | 420 | C2H2 Transcription Factor Family | AT1G72050 | 50.362 | 3.75e-90 | 276 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | C2H2 | Dod10g0070 | zf-C2H2 | 0.0011 | CL0361 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Dod10g0070 | K09191 | - | gmx:100801812 | 602.053 |