LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dod10g0029	ATGGCGACAAAACTCACTCTGATCAGAACCACAGCTCTCTCTACAATGATCCTTACCTTTCTTGGCTTCGGAATCGTTACCCTCTTCATCACAACAACATGTGCACAACAATCCCCAAACTACGTAGGAGATGACTGCCGCAACTCATCACAAGAAGCTCTAACAGAGGCATACCGAACCAACCTCAAAAACGTCCTGTCCTGGCTATCCTCCGATGCAGCAACAAGCAGGGGATACAACCACACCAGCATGGGAACCGGCACAGCTGATGCTGTCTATGGCCTCTATGACTGCAGGGGTGATGTCACTGGAACTTTCTGCCAGTTCTGTGTCTCTACTGCCGCCTCAGATATTCTCCAGCACTGTCCCAACAGATCATCTGCAGTGATATGGTACAACTACTGCATCCTCAGGTACTCCAATCACAATTTCATAGGGAACCTCACGATAACACCGTCATGGCAAATCCTGGGATCCAAGAATGACACCGATCCATCAGGAGATCTCAAGAAAGCCGAGAGTTACATGCAGAGTTTGATAAGGAAAGCCACGGTGGAGACCAACCTGCTGTATGCGATGGGTGAGTACAAGTTGAGTCCTTCAGCGGAAAGGTATGGGTTGGTGCAGTGCAGCAGGGACCTTACTAGTGACCAGTGCAGCCGGTGCTTGAACGCTATGTTGGACAGAGTTCCCCAGTGCTGTGCGGCGAAGGTGGGGTGGCAGGTTTTGGCACCAAGCTGCCTGATAAAGTATGATGATTTTATGTTCTACCAGATCACTACTCAACAAGCTTCTATGCCGAGTCCAGCCAAGCAGGATGGTACAAATAAGTCAAAAACCTTGATCATCATCATTGTGAGTGTGTTGGTTGCATTCGGTCTACTAAGTAGTTCTATCTACTGTTTATGGCGTCGCCATCGATCAAATAAAGATGGACCACTACCGGAGATCACTTCAATATCTTTACATGGTCGTGCTCAAAGAGAGGATTCATTGAATGCGGATCTTCCTACAATCCCTTTAATTTGGATTCGACAAAGCACTAATAACTTTTCAGAGTCTTGTAAATTAGGGGAAGGTGGATTTGGTCCCGTTTACAAGGGAAATTTGCAAGATGGGACAGAAATTGCTATTAAAAGACTCTCAAAAACATCTGGTCAAGGTCTAGAAGAGTTCAAGAATGAAGTCATCTTCATAGCCAAACTTCAACATAGAAACCTTGTGAGACTATTGGGTTGTTGTGTTGAGGAAAATGAAAAGATACTTGTATATGAGTACATGCCCAATTCTAGCCTTTCCTTTCACTTATTTGATGAGGAAAAACAAAAGCAACTAGATTGGAAGTTACGCTTGAACATTATTAATGGCATTGCAAAAGGACTTCTATACCTTCATGAGGACTCTAGGCTTAGAGTAATCCATCGAGATCTAAAAGCTAGTAATGTTCTACTGGATCAATATATGAATCCAAAAATATCTGATTTTGGATTGGCAAGGGCATTTGAAAAAGACCAGATTCAGGAAAATACTGGAAGGGTTATGGGCACCTATGGATACATGTCTCCGGAATATGCTATGGAAGGGTTATATTCAGTGAAGTCTGATGTTTTTAGCTTTGGAGTTCTTCTATTAGAAATCATTTCTGGGAAACGGAATAGTGGATTCTATCTTTCGGAACATGGTCAGAGTCTTCTTATATATAGTTGGAGACTTTGGTGCGAAGGAAAATGTTTGGAAGTGGTAGATCCAATACTAGAAAAGACACACAGAGACAATGAAATGACGAGGTGCATACACATTGGTTTGTTGTGTGTACAAGAAGATGCAGGAGATCGACCTACCATGTCTACGGTTGTTGTCATGCTAGCAAGTCAAACAATGGTCCTTCCCAATCCTAATCATCCTGCATTTTCAGTTGGACGAAAGATCAAGGAAGAAGAGTCAACATCAAAAGCTTCCAAGGATCCTTCTATTAATGAAGTATCAGTCTCAAATATTTTACCCAGGTAA	2010	0.4299	MATKLTLIRTTALSTMILTFLGFGIVTLFITTTCAQQSPNYVGDDCRNSSQEALTEAYRTNLKNVLSWLSSDAATSRGYNHTSMGTGTADAVYGLYDCRGDVTGTFCQFCVSTAASDILQHCPNRSSAVIWYNYCILRYSNHNFIGNLTITPSWQILGSKNDTDPSGDLKKAESYMQSLIRKATVETNLLYAMGEYKLSPSAERYGLVQCSRDLTSDQCSRCLNAMLDRVPQCCAAKVGWQVLAPSCLIKYDDFMFYQITTQQASMPSPAKQDGTNKSKTLIIIIVSVLVAFGLLSSSIYCLWRRHRSNKDGPLPEITSISLHGRAQREDSLNADLPTIPLIWIRQSTNNFSESCKLGEGGFGPVYKGNLQDGTEIAIKRLSKTSGQGLEEFKNEVIFIAKLQHRNLVRLLGCCVEENEKILVYEYMPNSSLSFHLFDEEKQKQLDWKLRLNIINGIAKGLLYLHEDSRLRVIHRDLKASNVLLDQYMNPKISDFGLARAFEKDQIQENTGRVMGTYGYMSPEYAMEGLYSVKSDVFSFGVLLLEIISGKRNSGFYLSEHGQSLLIYSWRLWCEGKCLEVVDPILEKTHRDNEMTRCIHIGLLCVQEDAGDRPTMSTVVVMLASQTMVLPNPNHPAFSVGRKIKEEESTSKASKDPSINEVSVSNILPR*	670

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dod10g0029	669	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	472	484	IPR008271	GO:0004672\|GO:0006468
	Dod10g0029	669	SMART	serkin_6	351	627	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dod10g0029	669	Gene3D	Phosphorylase Kinase; domain 1	317	426	-	-
	Dod10g0029	669	Pfam	Domain of unknown function (DUF3403)	624	669	IPR021820	GO:0004674
	Dod10g0029	669	SUPERFAMILY	Protein kinase-like (PK-like)	336	637	IPR011009	-
	Dod10g0029	669	ProSiteProfiles	Gnk2-homologous domain profile.	40	144	IPR002902	-
	Dod10g0029	669	ProSiteProfiles	Protein kinase domain profile.	351	637	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dod10g0029	669	CDD	STKc_IRAK	357	622	-	-
	Dod10g0029	669	Gene3D	-	37	144	IPR038408	-
	Dod10g0029	669	Gene3D	-	153	256	IPR038408	-
	Dod10g0029	669	Pfam	Salt stress response/antifungal	46	141	IPR002902	-
	Dod10g0029	669	Pfam	Salt stress response/antifungal	173	252	IPR002902	-
	Dod10g0029	669	MobiDBLite	consensus disorder prediction	642	669	-	-
	Dod10g0029	669	MobiDBLite	consensus disorder prediction	654	669	-	-
	Dod10g0029	669	Pfam	Protein tyrosine and serine/threonine kinase	355	620	IPR001245	GO:0004672\|GO:0006468
	Dod10g0029	669	Gene3D	Transferase(Phosphotransferase) domain 1	427	630	-	-
	Dod10g0029	669	ProSiteProfiles	Gnk2-homologous domain profile.	150	256	IPR002902	-
	Dod10g0029	669	PANTHER	RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8	31	666	-	-
	Dod10g0029	669	PANTHER	PROTEIN KINASE DOMAIN	31	666	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dod10g0029	Dod-Chr10	1433368	1447460	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dod10g0029	26	669	Receptor kinase-like Gene Family	AT4G05200	42.245	8.17e-179	523

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Dod10g0029		PK_Tyr_Ser-Thr	4.9e-49	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Dod10g0029	-		-	ahf:112718031	971.074