Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g0014 ATGAGTCAAATGGCAAATGGGGTCAAAGATGATGTGTTGTCAAATGATCAGACAGAGTCAAAGTTGAATGACGAGGGTAGTGGAGGAAGCATTGGTGGAGTTGTTCTGAAGAAAGGGCCATGGACATCTGCAGAAGATGCTATTTTGGTGGACTATGTGAAGAAGCATGGGGAGGGTAACTGGAATGCTGTTCAGAAGAACACGGGCTTGTCTCGTTGCGGAAAAAGTTGCAGACTCCGTTGGGCGAATCACCTCAGACCAAATTTAAAGAAAGGGCCATTTACTGCAGATGAGGAGCGTTTGATTGCTGAACTCCATGCCAACATGGGAAACAAATGGGCACGCATTGCGGAACATTTTCCTGGTCGAACAGACAATGAAATAAAGAATTACTGGAACACCCGGATCAAGAGGCGCCAACGGTCTGGCTTGCCACTTTATCCTCCTGAAGTGTGTCTGGCATTGCGAGAGAGTCAGTGTGGCCATGGTACTGATGGAATTAAAGATGGTGTCAGAGGCCATCGTGATTTCTTGCAGAAAAAAAGTTATGAAGCACATGATGCTGTATTTGACAGTTTGATGGAAAATCAGGGAGTCTTACCTTATATGCCTCAGCTTTCTGACATCTCTGTTAATAGCATTCTGGTCAAAGGTCTTGGTTCTCCTCATTGTAGTAATTTTGTTCCATCAACATTACTCAAGAATAATCTTCTACAAGAGTCAACACTGCCTTTTCTTGATTCCGGTGGAATCAACAGGAATGGGTTTTTCCCATTTGATCATATTCACAATAATTGTTCCGATAAGATTTCAGAATCATTTGGAATACATTCTCCCCTTGATCCTGGTTCCTCATCACATAGCTCTATTTCTTACAGCCATTCACTTTCAAATGGCGATTCCTCTACTTCTAAGCCAACTTCTGAGGCTGTGATGTTAGAGCTCCCTTCATTCCAATACCCAGAAGCTGATATAGGCAGCTGGGGTACATCTCCCCCACCTCCATTGCATATGTCTGCTGATGTTATTCAGTATCCTTTGCCACCTGGTGCACTGCAATCGGATTGTTCTTCACCACGTAATAGTGGCTTGCTTGATGCCTTACTTTATGAGGCAAAGTCTCTTACCTGTTCAAATAATTATTGTTCTGACAAGAGTTCAAATTCATCTGCTGCAACTCCTAGTGACAGAGCTGGGAGTTCTGCTTTGAACATCTGTGAGGTGGAATTGGGGGACTTTGCTGACCCTATATGTCCCTTAGGTGCAACTTCTATCCTGAACGAGTGCACAGCTATCCGTGCCAATGGAAATTCATCGAATGAACAGACACCTGTTCAAAGCTCTAGTGGCAACATTGCGAATTTAGATTCTGTTGACCAGATTTGGACCCCAATTAGCGAAATCCAAACCATAGACATGTTGGATATCACTTGGCCAGATGCCTTGCTTGCTTCAGACTGGGATGAGCAGTATTCTAGGCATGGCAAAGACCAATCCATCATGACTGATGCTGGCGACGATTTCGCGGACTACAAGCATATGGCTGGTGGAACTTAA 1557 0.4412 MSQMANGVKDDVLSNDQTESKLNDEGSGGSIGGVVLKKGPWTSAEDAILVDYVKKHGEGNWNAVQKNTGLSRCGKSCRLRWANHLRPNLKKGPFTADEERLIAELHANMGNKWARIAEHFPGRTDNEIKNYWNTRIKRRQRSGLPLYPPEVCLALRESQCGHGTDGIKDGVRGHRDFLQKKSYEAHDAVFDSLMENQGVLPYMPQLSDISVNSILVKGLGSPHCSNFVPSTLLKNNLLQESTLPFLDSGGINRNGFFPFDHIHNNCSDKISESFGIHSPLDPGSSSHSSISYSHSLSNGDSSTSKPTSEAVMLELPSFQYPEADIGSWGTSPPPPLHMSADVIQYPLPPGALQSDCSSPRNSGLLDALLYEAKSLTCSNNYCSDKSSNSSAATPSDRAGSSALNICEVELGDFADPICPLGATSILNECTAIRANGNSSNEQTPVQSSSGNIANLDSVDQIWTPISEIQTIDMLDITWPDALLASDWDEQYSRHGKDQSIMTDAGDDFADYKHMAGGT* 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g0014 518 CDD SANT 40 85 IPR001005 -
Dod10g0014 518 MobiDBLite consensus disorder prediction 1 25 - -
Dod10g0014 518 MobiDBLite consensus disorder prediction 277 308 - -
Dod10g0014 518 CDD SANT 93 134 IPR001005 -
Dod10g0014 518 ProSiteProfiles Myb-like domain profile. 36 85 IPR001005 -
Dod10g0014 518 SMART sant 37 87 IPR001005 -
Dod10g0014 518 SMART sant 90 138 IPR001005 -
Dod10g0014 518 SUPERFAMILY Homeodomain-like 37 132 IPR009057 -
Dod10g0014 518 Gene3D - 93 158 - -
Dod10g0014 518 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 86 140 IPR017930 -
Dod10g0014 518 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 33 85 IPR017930 -
Dod10g0014 518 Gene3D - 37 90 - -
Dod10g0014 518 PANTHER TRANSCRIPTION FACTOR, PUTATIVE-RELATED 1 517 - -
Dod10g0014 518 ProSiteProfiles Myb-like domain profile. 86 136 IPR001005 -
Dod10g0014 518 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 1 517 - -
Dod10g0014 518 Pfam Myb-like DNA-binding domain 38 85 IPR001005 -
Dod10g0014 518 Pfam Myb-like DNA-binding domain 91 134 IPR001005 -
Dod10g0014 518 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g0014 Dod-Chr10 1059716 1065845 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g0014 35 510 MYB Transcription Factor Family AT3G11440 43.513 4.00e-107 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dod10g0014 Myb_DNA-binding 1.9e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g0014 K09422 - gmx:100785877 649.818