Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g0012 ATGGCTCCCAAGAGAGAGAGCGATAGCGACGAAGACGACATCTTCTACTACCGCTACAGCTCTTCTTCCTCAAACCAAACCCAAACCTCAACACAACGAAACAACAATAAACCCAACACTGGACCCTCTTCATCATCTTCCTCGACCTTGGCCCCATCGAAATCAACCCTTTACGTCTCCAACCTTGACTACTCCCTCACCAACTCCGACCTCCACACCCTCTTCTCCACCTTCGGCCGCATCGCCCGCGTCACCGTCCTCAAGGACCGCCACACCCGCCTCAGCCGCGGCGTCGCCTTCATCCAGTTCGTCTCCCGCGACGACGCCCGCCGCGCCGCCGACCAGATGCACCGCAAGGTCCTCAACGGCCGCACCCTCTCCGCCTCCATCGCCGTCGACAATGGCCGCGCCCCTGAGTTCATCCGCAAGCGCGTCTACAACGAAACCGGCCGCTGCTTCGAGTGCGGCCACGCCGGTCACCTCTCCTACGACTGCCCGAAGAATCAGTTGGGCCCACGGCAACGACCCCAGCCAAAGCGTGGCAGGCGTGGCAGCGGCGGCGGTAGAGGGTTCCGGCGAGCCGGGGAAGAAGGAGAGGACGACGACGAGGGGTCCGATGGTGGAGGCGGTGGGACCGGGCGGTTCGAGGATGATAATTGGGCTTCGGTTGTGGATGATGGCGCGGATGAGAGGCTGTTGGGGAGAAATGAGAAGGTTGTGGTGAAGAAGAAGGGGAAGAAAGCTGGGTACTTCAGCGATGAGAGTGGTGATGATGATGATGATGATGGTGATGAATGA 798 0.6028 MAPKRESDSDEDDIFYYRYSSSSSNQTQTSTQRNNNKPNTGPSSSSSSTLAPSKSTLYVSNLDYSLTNSDLHTLFSTFGRIARVTVLKDRHTRLSRGVAFIQFVSRDDARRAADQMHRKVLNGRTLSASIAVDNGRAPEFIRKRVYNETGRCFECGHAGHLSYDCPKNQLGPRQRPQPKRGRRGSGGGRGFRRAGEEGEDDDEGSDGGGGGTGRFEDDNWASVVDDGADERLLGRNEKVVVKKKGKKAGYFSDESGDDDDDDGDE* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g0012 265 MobiDBLite consensus disorder prediction 1 52 - -
Dod10g0012 265 MobiDBLite consensus disorder prediction 1 15 - -
Dod10g0012 265 ProSiteProfiles Zinc finger CCHC-type profile. 151 167 IPR001878 GO:0003676|GO:0008270
Dod10g0012 265 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 55 133 IPR000504 GO:0003723
Dod10g0012 265 Gene3D - 19 217 IPR012677 -
Dod10g0012 265 SMART c2hcfinal6 151 167 IPR001878 GO:0003676|GO:0008270
Dod10g0012 265 MobiDBLite consensus disorder prediction 219 253 - -
Dod10g0012 265 SMART rrm1_1 56 129 IPR000504 GO:0003723
Dod10g0012 265 MobiDBLite consensus disorder prediction 16 52 - -
Dod10g0012 265 SUPERFAMILY Retrovirus zinc finger-like domains 134 169 IPR036875 GO:0003676|GO:0008270
Dod10g0012 265 SUPERFAMILY RNA-binding domain, RBD 19 139 IPR035979 GO:0003676
Dod10g0012 265 MobiDBLite consensus disorder prediction 164 265 - -
Dod10g0012 265 CDD RRM_ZCRB1 54 131 IPR034219 -
Dod10g0012 265 PANTHER ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1 6 258 IPR044598 GO:0000398|GO:0005689
Dod10g0012 265 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 57 126 IPR000504 GO:0003723
Dod10g0012 265 Gene3D - 142 178 - -
Dod10g0012 265 PANTHER ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1 6 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g0012 Dod-Chr10 971218 972908 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g0012 55 132 Eukaryotic Initiation Factors Gene Family AT1G49760 33.333 3.57e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g0012 K13154 - gmx:100814914 299.671