Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g0005 ATGTCACCCTCACCTTTGTCCCTCTTGCTCTGCTTTCTCTTCGTCCTCCTTTTTGCACCATCACTCCTAGCTCAAGTTCCATCCCCTCCTCTTCCCCCAAACAACGCCACTTCTTCGTCTTCTTCTTCTTCCTCCTCTGCTGCAGCTGCCTGCAAGTCCACATTGTATCCAAAACTCTGCCGCTCCATACTCTCTGCCATACGCTTCTCACCTTCTGATCCATACCTCTACGGCAAGTTCTCCGTCAAGAAAAGCCTCAAACAGGCAAGGAAACTTGCCAAAGTGTTTGAGGACTTCCTCAATCGCCACCAATTCCCTTCTTCTGCTTCTCTGAACCGTGCAGAGGTTGCTGCACTTGGTGACTGCAGAGACCTCAACCAGCTCAATGCGGGCTTCTTGGAGTCCATCTCTGAGGAGCTCAAATCAGCTGAGTCTTCAGACGCAGAGCTGGTTGACAAGATTGAGAGCTATCTGAGCGCTGTGGCCACCAACCACTACACTTGCTATGATGGGCTGGCGGTGACCAAAAGCAGCATCGGCAGTGCCCTTGTGGTGCCACTCAAGGGTGCGACGCAGTTGTACAGTGTGTCGCTTGGGTTGGTCACTGAGGCCCTCGACAGGAACCTCAGGAAGAATAAGACCCGCAAACATGGTCTCCCCACCAAGACCTTCAAGGTCAGGCAGCCACTCGAGAAGCTCATCAAGCTTCTTCGAACAAAGTATAATTGCAAGAAATATTCCAATTGTACTAGAACTGAAAGGATTCTTGAAGAAAGCCAAAGCCAAGGAATTCTGCTGAATGACTTTGTGATTGTGAGCCCTTATGGGACAGACAACTATACTTCCATTGGGAACGCTATTGCTGCTGCACCCAATGACACAAAGCCACAAGATGGCTATTTCCTTGTCTATGTCAGAGAAGGATACTATGAGGAATATGTAATTGTTCCCAAAGAAAAGAAAAGTATCTTGCTTATTGGAGATGGTATTAACAAGACCGTCATCACAGGGAACCATAGTGTCATTGATGGGTGGACAACATTCAATTCTTCCACCTTTGCTGTTGCTGGAGAAAGGTTTATTGCAGTGGATGTTACTTTCAGGAACACAGCTGGTCCCGAAAAGCACCAAGCAGTGGCAGTGAGGAACAATGCTGACCTGTCCACATTCTATCGTTGCAGCTTTGAGGGATATCAAGACACACTCTATGTTCACTCTCTGAGGCAGTTCTACAGGGACTGTGATATTTATGGCACCGTGGACTTCATATTTGGCAATGCTGCAGTGGTCTTCCAGAGTTGCAACATCTATGCCAGAAAACCAATGGCAAACCAGAAGAATGCTGTAACAGCACAAGGAAGAACAGATCCCAATCAAAACACTGGAATTTCAATCCAAAACTGCACAATTGATGCTGCACCAGACTTGGCAGCAGACTTAAACTCCACCTTGAGTTACTTGGGCAGGCCTTGGAAGGAGTATTCAAGGACTGTGTATCTGGAATCATATATTGGAGATCTGATTCAACCTGCAGGATGGTTAGAATGGAATGGGACAGTCGGGTTAGGCACCCTCTTCTATGGGGAGTTCAACAACTATGGACCTGGTTCTAAAACCAACAACAGAGTGCAATGGCCAGGTTACAGTGTGTTGAATGCCACCCAAGCTTGGAACTTTACAGTCCTTAATTTTACACTAGGAAACACCTGGCTTCCTGATACAGATATACCCTACACTGAAGGGTTACTAAATTAG 1755 0.4707 MSPSPLSLLLCFLFVLLFAPSLLAQVPSPPLPPNNATSSSSSSSSSAAAACKSTLYPKLCRSILSAIRFSPSDPYLYGKFSVKKSLKQARKLAKVFEDFLNRHQFPSSASLNRAEVAALGDCRDLNQLNAGFLESISEELKSAESSDAELVDKIESYLSAVATNHYTCYDGLAVTKSSIGSALVVPLKGATQLYSVSLGLVTEALDRNLRKNKTRKHGLPTKTFKVRQPLEKLIKLLRTKYNCKKYSNCTRTERILEESQSQGILLNDFVIVSPYGTDNYTSIGNAIAAAPNDTKPQDGYFLVYVREGYYEEYVIVPKEKKSILLIGDGINKTVITGNHSVIDGWTTFNSSTFAVAGERFIAVDVTFRNTAGPEKHQAVAVRNNADLSTFYRCSFEGYQDTLYVHSLRQFYRDCDIYGTVDFIFGNAAVVFQSCNIYARKPMANQKNAVTAQGRTDPNQNTGISIQNCTIDAAPDLAADLNSTLSYLGRPWKEYSRTVYLESYIGDLIQPAGWLEWNGTVGLGTLFYGEFNNYGPGSKTNNRVQWPGYSVLNATQAWNFTVLNFTLGNTWLPDTDIPYTEGLLN* 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g0005 584 Gene3D - 268 584 IPR012334 -
Dod10g0005 584 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 49 202 IPR035513 -
Dod10g0005 584 TIGRFAM PME_inhib: pectinesterase inhibitor domain 15 181 IPR006501 GO:0004857
Dod10g0005 584 ProSitePatterns Pectinesterase signature 2. 416 425 IPR033131 -
Dod10g0005 584 PANTHER PECTINESTERASE 10 582 - -
Dod10g0005 584 Gene3D Invertase/pectin methylesterase inhibitor family protein 42 204 IPR035513 -
Dod10g0005 584 PANTHER PECTINESTERASE 10 582 - -
Dod10g0005 584 SUPERFAMILY Pectin lyase-like 268 581 IPR011050 -
Dod10g0005 584 SMART PMEI_2 42 200 IPR006501 GO:0004857
Dod10g0005 584 CDD PMEI-like_3 51 203 - -
Dod10g0005 584 Pfam Pectinesterase 270 567 IPR000070 GO:0030599|GO:0042545
Dod10g0005 584 Pfam Plant invertase/pectin methylesterase inhibitor 48 199 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g0005 Dod-Chr10 574909 580962 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g0005 50 584 Carbohydrate Esterase AT3G10720 61.111 0.0 703
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g0005 K01051 - gmx:100816503 952.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod10g0005 10 574909 580962 Dod10g0005 10 574909 580962 ECH