Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g2547 ATGGGTGGCTCAAAGGAAAACCATCTGGGTCCACTACCGGTGATACCTTCCTCAGATTTTCAAGGCGGTTCAAGAATGAAGGGCTTCAAGCTCGTGACGGAGATGGCACACCATCACCGGCGGCCTCTGAGCAACATCAATCAGAATATTGTGGACAAGGAGAAGCCGTGTGCTGTCAACAAGGAAGATCTTTCCAGGAAGTGTACAGAGACAGTTCAGAACTACCCTGAAAGCCTGTTAGCCCCCAGACCCAGTTACCAGTTAGATTGTGCAATCGTAGACATTGACGAATACGAGGATGGCAGTGACTGTTCAGTTCCAGTATTTGTGAAGCACACTGAAGCGATTTTAGATGAAATTGATAGAATTGAGGAAGTTGAAATGGAAGATGCGGAGGAACCTGTTAAGGACATCGATGCCCGTGATGGGAATGATCCACTTGCCGTTGTGGAGTACATTGATGATATCTACTGCTTTTACAAGAAAACTGAGAACTCTAGCCGCGTCTCTCCAAGTTACATGACTAGTCAGTTTGACGTCAATGAGAAGATGAGGGCCATTCTTATTGACTGGCTTATTGAGGTTCACTACAAATTTGAGCTTTTGGAGGAGACATTGTTCCTTACCGTCAATCTCATCGACAGATTCTTGGAGCGTCAGAAAGTGATCAGAAAGAAGCTTCAGTTGGTTGGTGTAACAGCCATGCTAATAGCATGTAAATATGAGGAGGTCTTAGTCCCCACGGTCGAGGATTTTGTTCTGATAACAGATAAAGCATATACAAGAAATGAAGTTCTAAATATGGAGAAATTAATGGTGAACACCTTGCAATTCAACTTGTCTGTGCCTACTCCATACGTGTTCATGAGAAGATTTCTTAAGGCAGCTCATTCTGACAAAAAGCTGGAGCTCTTGTCCTTCTTCTTGATCGAGCTATGCTTGGTGGAATGCAAAATGCTCAAGTTTGCACCATCTTTGCTAGCTGCTGCAGCCATTTACACAGCTCAATGTAGTCTGTATCAGTTTAAGCGATGGACTAGGACAAGCGAGTGGTACACTGATTATTCGGAAGAGCAGCTTCTAGAATGCTCAAAGTTGATGTCCACTTTACATCGGAAAGCTGGATCAGGGAAACTCACTGGAGTATATAGGAAGTACAGTACGTGGAAGTATGGTTGTGCGGCAAAAATAGAACCGGCCATATTTCTATTGGACAGTTAG 1221 0.4398 MGGSKENHLGPLPVIPSSDFQGGSRMKGFKLVTEMAHHHRRPLSNINQNIVDKEKPCAVNKEDLSRKCTETVQNYPESLLAPRPSYQLDCAIVDIDEYEDGSDCSVPVFVKHTEAILDEIDRIEEVEMEDAEEPVKDIDARDGNDPLAVVEYIDDIYCFYKKTENSSRVSPSYMTSQFDVNEKMRAILIDWLIEVHYKFELLEETLFLTVNLIDRFLERQKVIRKKLQLVGVTAMLIACKYEEVLVPTVEDFVLITDKAYTRNEVLNMEKLMVNTLQFNLSVPTPYVFMRRFLKAAHSDKKLELLSFFLIELCLVECKMLKFAPSLLAAAAIYTAQCSLYQFKRWTRTSEWYTDYSEEQLLECSKLMSTLHRKAGSGKLTGVYRKYSTWKYGCAAKIEPAIFLLDS* 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g2547 406 Pfam Cyclin, N-terminal domain 155 281 IPR006671 -
Dod09g2547 406 SMART Cyclin_C_2 283 400 IPR004367 -
Dod09g2547 406 SUPERFAMILY Cyclin-like 144 280 IPR036915 -
Dod09g2547 406 ProSitePatterns Cyclins signature. 185 216 IPR006671 -
Dod09g2547 406 Gene3D - 155 396 - -
Dod09g2547 406 CDD CYCLIN 184 273 IPR013763 -
Dod09g2547 406 CDD CYCLIN 281 367 IPR013763 -
Dod09g2547 406 PANTHER CYCLINS 73 401 IPR039361 -
Dod09g2547 406 Gene3D - 169 281 - -
Dod09g2547 406 SUPERFAMILY Cyclin-like 282 399 IPR036915 -
Dod09g2547 406 PANTHER CYCLIN-B2-3-RELATED 73 401 - -
Dod09g2547 406 SMART cyclin_7 190 274 IPR013763 -
Dod09g2547 406 SMART cyclin_7 287 369 IPR013763 -
Dod09g2547 406 Pfam Cyclin, C-terminal domain 283 399 IPR004367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g2547 Dod-Chr9 46591166 46601248 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g2547 1 404 Core Cell Cycle Gene Families AT1G20610 54.965 4.18e-156 445
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g2547 K21777 - gmx:100812029 604.364