Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g2534 ATGTTAATACAAAGTTCACTTCTAAGTTCAGTTGAAGCTGGTCTATGTTGTGTATCTGATGATCGGAAAGATATTCTATGTGACCAGAAGCCTTGTGGTCAAACTTGGCAGGGGTGCCTGAAATGCAGCAAGTGCCCCTTTGACTGGTGTACAAAAGCTGAATCAATGGAAGAGGACAGGAGGAATGCCGATAATCCTTGTATCTCAAACTGTCTAAGTGGCGTAGGTCAGCCATCAACTGCAAGTATAATGACTGATAATACTCCACCTCACATGGTATACAGGAGAAAGAAGCTACGTATGGGCTCAAATGCCCCACTTTTCAAGCTAGGACCAATGAATGTGCAGAAAAGTCCCAATTGCCCTTCATTCATAAGTTCATCTTTGCATTTACCATCAGCTGAGGATCAGCCAGTTGGTTTTCAAGTTAAGGATGAAATCGAAATGGTTAAAGATCCTGGTGTTCATTCTGTCTTATGTGATGGAGTAGCTAAAGATAACATGGAGAAAAATTTAGGTATTGACAGTGTAAATGATAGTTGTTCCTCTTCAGAATCAAATATGGAACTTGTTTCAGCTTCAATAGAAACTGAAATGGGTGAAACTGGTGAATGCTCCTCATCTAGTGCAATAGTTATCGATGTCACAAGGGAAGAGGTAACTGAAAAGGATTTCTGCATGAATATTCTAAGAAGCTATGGACTTCTTGGAGGAGATTCTTTAGCAGATAATGTTGCCTCTGTGGAAGATGCTGTTACTCCTGGTAATAGCTGCTGTTCCAGGTCATGCAAAACATGTGGACAGTTAGACAGTTCGATGAACATGCTTTTATGTGATCATTGTGAAGATGCATATCATCCGTCTTGCTACAATCCACGCTTGAAAAAATTACCAATTGATGAGTGGTTTTGTCATTCATGTCTTAAAAAAAGGCAGAAAATTCTCAAGGAGACAATCATCAAATCACCAGGTATCCACAATGAACTGGGAAAATGTAGAACTGCCTCAGTTAAGGCTGAATTGAATCCCGTACTGTTAATGCTCAGAAACACTGAGCCGTATACAACCAGTGTGCGGGTTGGTAAAGGTTTTCAAGCAGAAGTACTTGACTGGTCAGGCCCAATAGGAAGTAATCAAGATGAACTTCCTGAGCCATTGGAAATCAGTTCTTCAGAATTTTCTAGACTGCAGGAAGGAAATCAAAGAAATCCAAGTAGACTCAGTTCCATTGGTAATTGGCTTCAGTGTCGGGAGATTATAGATAGAGCCAATGGAACCATGTGTGGAAAATGGCGTAGAGCTCCACTTTTTGAAGTGCAAACTGATGACTGGGAGTGCTTCTGTGCTATCCATTGGGATCCATCTCACGCTGATTGTGCAGTACCTCAGGAGCTTGAAACAGATCAAGTTCTAAAGCAACTCAAGTATATAGAAATGCTAAGGCCTCGACTTGCTGCGAAACAAAGAAAATCAGATTGCAAAAATAGGGGTGACTGA 1497 0.4095 MLIQSSLLSSVEAGLCCVSDDRKDILCDQKPCGQTWQGCLKCSKCPFDWCTKAESMEEDRRNADNPCISNCLSGVGQPSTASIMTDNTPPHMVYRRKKLRMGSNAPLFKLGPMNVQKSPNCPSFISSSLHLPSAEDQPVGFQVKDEIEMVKDPGVHSVLCDGVAKDNMEKNLGIDSVNDSCSSSESNMELVSASIETEMGETGECSSSSAIVIDVTREEVTEKDFCMNILRSYGLLGGDSLADNVASVEDAVTPGNSCCSRSCKTCGQLDSSMNMLLCDHCEDAYHPSCYNPRLKKLPIDEWFCHSCLKKRQKILKETIIKSPGIHNELGKCRTASVKAELNPVLLMLRNTEPYTTSVRVGKGFQAEVLDWSGPIGSNQDELPEPLEISSSEFSRLQEGNQRNPSRLSSIGNWLQCREIIDRANGTMCGKWRRAPLFEVQTDDWECFCAIHWDPSHADCAVPQELETDQVLKQLKYIEMLRPRLAAKQRKSDCKNRGD* 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g2534 498 ProSitePatterns Zinc finger PHD-type signature. 263 307 IPR019786 -
Dod09g2534 498 ProSiteProfiles Zinc finger PHD-type profile. 260 310 IPR019787 -
Dod09g2534 498 Gene3D - 165 311 - -
Dod09g2534 498 SUPERFAMILY FYVE/PHD zinc finger 249 312 IPR011011 -
Dod09g2534 498 Pfam PHD-finger 263 309 IPR019787 -
Dod09g2534 498 Gene3D - 411 476 - -
Dod09g2534 498 ProSiteProfiles Zinc finger CW-type profile. 407 467 IPR011124 GO:0008270
Dod09g2534 498 PANTHER HISTONE ACETYLTRANSFERASE 29 491 - -
Dod09g2534 498 PANTHER REMODELING AND SPACING FACTOR 1 29 491 - -
Dod09g2534 498 SMART PHD_3 262 308 IPR001965 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g2534 263 308 C2H2 Transcription Factor Family AT3G01460 43.478 1.59e-06 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Dod09g2534 PHD 9.7e-11 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g2534 - - gmx:100813057 756.518