Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g2523 ATGCTGGTCGGGCAAGGTGCTCCTTCTTCGTCCTGTTGTTCAAACTTGGTCCCCAAATCCAACCGGGTTCCTCTTTCTCAACCTCAAAGGCGTGTTGCGTTATGGGAGGGGGTGCTGCTGCTGCTGCGTTATCCTCCCACTCCCAAACGCCTCCTTCTCTCCGTCACCGCCAACACCGACACCTCTCACCCCCAACACCCCATCGCAACGAGTACCGATTCTTCATTAAGCTCAAGCTTTGGAAGACTAAAAGCCCAGAAAGTGAAAGCTCTCATCCACAGAGCCAAGCAGCACAGAACAAGCACTCATGATGATGATGATGATCTCCTTCCCCGGCTTCGGCATCAGCATCATACGTCTCAATCTCATACCACCGAGAGACGACGTTCTCCAAAATCAAGAGGATGGGGGGATGGTGGCTCATCGTTTCGTTCTCTTCAGTCTCAGTCCCGAAACTTGCTCACTAAATCTTCGGCTGACACCAACTTCTTCTTCAGTCTCAAGTCCTTCAAGGAACTGGGCTGCGCCGACTACATCATTCACTCCCTGCACAAGCTCTCTTTCCTGCGCCCTTCACATATTCAGGCCATGGCATTTTCCCCTCTTCTTGCTGGCAAGACTTGTGTTATAGCTGATCAAAGCGGTTCTGGAAAAACATTAGCATATCTTGCACCAATCATTCAGCGTCTCAGACAAGAAGAACTACAAGGACATAGTAAATCCTCTTCGCAAGCTCCTAGAGTTGTGATACTGGCACCAACAGCTGAATTGGCTTCTCAGATCTTAGATAATTGTCGATCAATGTCAAGATCTGGGGTTCCATTCAAATCTATGGTTGTCACAGGTGGCTTTCGACAAAGAACTCAACTGGAAAATTTACAGCAGGGCGTTGATGTCTTAATAGCTACACCTGGTCGTTTTTTGTACATTATAAAGGAAGGCTTCTTGCAGTTAACAAATCTAAGATGTGCTGTGTTGGATGAGGTAGATATACTCTTTGGTGATGAGGATTTTGAAGTGGCTCTTCAATGCTTGATTAATTCTTCACCTGTTGCCACACAATATTTATTTGTGACTGCAACTCTACCTAGAAATGTATACAGCAAACTGGTTGAAGTGTTTCCCGATTGTGAAATGATCATGGGACCTGGTATGCACCGAATAAGCCCTCGCCTTGAAGAGATTGTAGTAGATTGCAGTGGAGAAGATGGACAAGAAAAAACTCCTGATACAGCATTCTCAAACAAAAGATCTGCTCTTCTGCAGCTTGCAGAGGAACGTCCTGTTCCAAGAACTATTGTGTTCTGCAACAGAATTGAAACATGCAGAAAAGTTGAAAATTCATTGAAGCGTTTTGATAGAAAGGGAACTAATATACAAGTTCTACCTTTCCATGCTGCTATGACACAAGAATCACGGCTTGCTAGCATGGAAGAGTTTACACGTTCGCCATCAAAAGAAGCCTCCCAGTTTTTGGTTTGCACGGACCGAGCATCAAGGGGAATTGACTTTGCGGGAGTAGATCACGTGATACTGTTCGACTTCCCGCGGGATCCGAGTGAGTACGTGCGGCGTGTTGGAAGAACAGCCAGAGGTGCAAAGGGAGTGGGGAAGGCATTTATATTCGTGGTAGGCAAGCAAGTATCCCTCGCACGCAAAATCATGGAAAGAAATCAGAAGGGTCACCCACTTCATGATGTACCTTCCGCTTATAATTAG 1719 0.4619 MLVGQGAPSSSCCSNLVPKSNRVPLSQPQRRVALWEGVLLLLRYPPTPKRLLLSVTANTDTSHPQHPIATSTDSSLSSSFGRLKAQKVKALIHRAKQHRTSTHDDDDDLLPRLRHQHHTSQSHTTERRRSPKSRGWGDGGSSFRSLQSQSRNLLTKSSADTNFFFSLKSFKELGCADYIIHSLHKLSFLRPSHIQAMAFSPLLAGKTCVIADQSGSGKTLAYLAPIIQRLRQEELQGHSKSSSQAPRVVILAPTAELASQILDNCRSMSRSGVPFKSMVVTGGFRQRTQLENLQQGVDVLIATPGRFLYIIKEGFLQLTNLRCAVLDEVDILFGDEDFEVALQCLINSSPVATQYLFVTATLPRNVYSKLVEVFPDCEMIMGPGMHRISPRLEEIVVDCSGEDGQEKTPDTAFSNKRSALLQLAEERPVPRTIVFCNRIETCRKVENSLKRFDRKGTNIQVLPFHAAMTQESRLASMEEFTRSPSKEASQFLVCTDRASRGIDFAGVDHVILFDFPRDPSEYVRRVGRTARGAKGVGKAFIFVVGKQVSLARKIMERNQKGHPLHDVPSAYN* 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g2523 572 CDD DEADc 179 366 - -
Dod09g2523 572 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 199 380 IPR014001 -
Dod09g2523 572 MobiDBLite consensus disorder prediction 97 134 - -
Dod09g2523 572 CDD SF2_C_DEAD 392 543 - -
Dod09g2523 572 Pfam Helicase conserved C-terminal domain 416 532 IPR001650 -
Dod09g2523 572 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 72 571 - -
Dod09g2523 572 Pfam DEAD/DEAH box helicase 193 366 IPR011545 GO:0003676|GO:0005524
Dod09g2523 572 MobiDBLite consensus disorder prediction 91 147 - -
Dod09g2523 572 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 202 544 IPR027417 -
Dod09g2523 572 Gene3D - 140 380 IPR027417 -
Dod09g2523 572 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 168 196 IPR014014 GO:0003724
Dod09g2523 572 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 72 571 - -
Dod09g2523 572 SMART helicmild6 443 533 IPR001650 -
Dod09g2523 572 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 415 572 IPR001650 -
Dod09g2523 572 SMART ultradead3 187 395 IPR014001 -
Dod09g2523 572 Gene3D - 391 566 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g2523 Dod-Chr9 46269362 46273000 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g2523 167 554 Eukaryotic Initiation Factors Gene Family AT3G19760 27.990 1.43e-30 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g2523 K13179 - gmx:100780849 746.117