Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g2458 ATGGATGCCGAAGACGAGGAAGCTCAAACTCTACCTTCTCCACCCCCTTCTGCTCCTTCTCCTTCTCCTCCTCCACTCCAACAACACTTGATTCAGGACACGCAGGCGGTGGAAGTGGAAGGCACTGCTGTTCCCAAAGTGGAACAAGGAGGAGCGGTGGTGGTTTCGGCTGATACGGGCGAAGAAGCGGCGGAGGAGACGGTGGTGGTGGTTCCGGAGGAGGCACAGATTGCGGATTTGGCGAATGAAGGAGAGAGGGGAATGCAAGTGATGGAAGATGATAGGGTTGGTGATGAGGTAGTTGAGAAGGTAAATGTGCCTGGCCATGAAGACCATGAGATTATGGAAGGAAACGATGTGGCGAAGGTGGAAGAGGAGGAAACTCGTTTGGAAGTCGTGGATGGTGAAGATGAGGTGGTGGTGGAGGAGGTAGCAAATAAAGCTGGGTTCATGGAAGAAAGAGAAGAAAAAGAACATGAGCATGAAGAGCATGATGATGAAAAAGAAGCTGATGCTGGTTGCGATATAGCACATGAAGCTGCTTTCATGGAAGGACACGAACAGGTACAAGAAAGCGAACAAGAGGAAGCTGATGTTGTTGTTGGTGGTAGTGGTGGGATAGGAAATGAAGCTGCTCTGATGGAAGAGCAGGAAGAAGGACAAGAACATGAAGAAGAGGAGCAACAAGAGGACGAAGCAGAAGACGAAGACGACGAACAAGCTGATGATGCTGCTGGTCGTATAGCAAATGAAGCTAATTTGATGGAAGAACATGTAGAAGAACAGCAACAAGAAGGAGAAGAAGAACAAGCTGATGCTGGTAATGGCATAGAAAATGAAGCTGATTTGGTGGAAGAACACGAAGAAGGACAAGAAGATGGAGAAGAAGAAGAACAAGCTGATGCTGGTAATGTTATAGCAAATGAAGCTGATTTGATGGAAGAACATGAAGAAGGACAAGAAGATGAAGAACAAGAAGAAGAAGAAGCTGGTGATGGTGCCGGTGAGGGTATGGGAGAAGAAGATACAGAGGAAGCTGCGGAGCAGAGTAGAAGTGTGAGTGGTGGGAAGAGGAAGCGAGGGAGTGGGAAGAATTCCAAGCCCACAGGAGGGAGAGTCCCATCAAAGAAAAAGATGGAAGAAGACGTTTGTTTCATTTGCTTCGACGGGGGTGAACTTGTGCTTTGCGACCGCAGGGGATGTCCAAAGGCTTACCATCCTAAATGCGTTAATCGTGATGAGGCTTTTTTCCGATCCAAGGGAAAATGGAATTGTGGTTGGCATCTCTGCAGCAACTGTGAGAAGAATGCTTACTATATGTGTTATACGTGTACATTCTCTTTGTGCAAGGGATGCATCAAAGATGCTGTTATCTTATGTGTTAGGGGAAACAAGGGCTTTTGTGAGTCATGCATGAGAACTGTAATGTTGATTGAACAGAATAATCAGGGAAACAACATGGGACAAGTGGATTTTGATGACAGAAGCACCTGGGAGTATCTCTTCAAAGACTACTACATGGATCTAAAGGAAAAGCTAAATCTGACATTTGATGAAGTCACACATGCTAAAAACCCTTGGAAGGGATCCGATGTGCTTCCTTCTAAAGATGAATCGGCAGATGAACTTTTTGATGCCAATAATGAAAGAGGATCAGATTCAGATAGCTCATATGAGAATGTGGATTTGAGTCGTTCAAAAAGAAGAAAGGGCAAGAAACGGATGAAGTCCCGTTCTAAAGAAGGTAATTCATATGGTTCTGTGCTTGGTGTTGATGATGAAAGCTCTGAGTGGGCTTCAAAAGAGCTTTTGGAGTTTGTTATGCACATGAGAAATGGAGACAAATCTGTTTTGTCTCAGTTTGATGTGCAGGCTCTTTTGCTAGAGTATATCAAAAGAAATAAGCTTCGAGATCCTCGTAGAAAAAGTCAAATCATTTGTGATGCAAGGCTTCAAAATTTGTTTGGTAAACCAAGGGTGGGACATTTTGAAATGTTAAAGCTTCTTGAATCCCATTTCCTTCTCAAAGAAGATTCTCAAGCAGAAGATATGCAGGGGAGTGTTGTTGATACTGAAGTTAGTCATGTGGAAGGTGATGGAAACTCCGATTTATATCTTAAAGGTGGCAAAGATAAGAAACGTAAAACTCGTAAGAAGGGTGATGAGAGAGGACTTCAATCTAATGTGGATGATTATGCTGCCATTGATAATCATAATGTTAATTTAATTTATCTCCGACGTAATTTGGTGGAAGAGCTACTTGAAGATACAGAAAAGTTTCATGATAGAGTTGTTGGTTCTTTTGTGAGAATAAGGATTTCAGGTAGTGGTCAGAAGCAAGACTTGTACAGGCTGGTTCAGGTTGTAGGTACATGCAAAGCAGCAGAGCCATATAAAGTTGGTAAAAGGATGACAGATCTCTTGCTAGAAATCTTAAATTTAAACAAGACAGAGATTGTATCAATTGATATTATCTCAAATCAGGAGTTCACAGAGGATGAGTGCAAGCGACTCCGCCAAAGCATAAAGTGTGGGCTCATAAATCGGCTGACTGTGGGTGACATTCAGGAAAAAGCATTGGCACTTCAGGCAGTTAGAGTAAATGATGTGAGTTGTTTTTCTATACCTTTAATACTTAATGGGGATGCATCTTTTGGGGAAAAAAAAAATTCTTACATTGTCTGTCAAGGCCTAGTAATGGTGTTCAGAAAACTCTTTTTCATTGTATACACACGTTGA 2739 0.4283 MDAEDEEAQTLPSPPPSAPSPSPPPLQQHLIQDTQAVEVEGTAVPKVEQGGAVVVSADTGEEAAEETVVVVPEEAQIADLANEGERGMQVMEDDRVGDEVVEKVNVPGHEDHEIMEGNDVAKVEEEETRLEVVDGEDEVVVEEVANKAGFMEEREEKEHEHEEHDDEKEADAGCDIAHEAAFMEGHEQVQESEQEEADVVVGGSGGIGNEAALMEEQEEGQEHEEEEQQEDEAEDEDDEQADDAAGRIANEANLMEEHVEEQQQEGEEEQADAGNGIENEADLVEEHEEGQEDGEEEEQADAGNVIANEADLMEEHEEGQEDEEQEEEEAGDGAGEGMGEEDTEEAAEQSRSVSGGKRKRGSGKNSKPTGGRVPSKKKMEEDVCFICFDGGELVLCDRRGCPKAYHPKCVNRDEAFFRSKGKWNCGWHLCSNCEKNAYYMCYTCTFSLCKGCIKDAVILCVRGNKGFCESCMRTVMLIEQNNQGNNMGQVDFDDRSTWEYLFKDYYMDLKEKLNLTFDEVTHAKNPWKGSDVLPSKDESADELFDANNERGSDSDSSYENVDLSRSKRRKGKKRMKSRSKEGNSYGSVLGVDDESSEWASKELLEFVMHMRNGDKSVLSQFDVQALLLEYIKRNKLRDPRRKSQIICDARLQNLFGKPRVGHFEMLKLLESHFLLKEDSQAEDMQGSVVDTEVSHVEGDGNSDLYLKGGKDKKRKTRKKGDERGLQSNVDDYAAIDNHNVNLIYLRRNLVEELLEDTEKFHDRVVGSFVRIRISGSGQKQDLYRLVQVVGTCKAAEPYKVGKRMTDLLLEILNLNKTEIVSIDIISNQEFTEDECKRLRQSIKCGLINRLTVGDIQEKALALQAVRVNDVSCFSIPLILNGDASFGEKKNSYIVCQGLVMVFRKLFFIVYTR* 913
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g2458 912 SUPERFAMILY Plus3-like 735 864 IPR036128 GO:0003677
Dod09g2458 912 ProSiteProfiles Plus3 domain profile. 734 867 IPR004343 GO:0003677
Dod09g2458 912 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 372 476 IPR013083 -
Dod09g2458 912 MobiDBLite consensus disorder prediction 314 343 - -
Dod09g2458 912 Gene3D SWIB/MDM2 domain 590 683 IPR036885 -
Dod09g2458 912 MobiDBLite consensus disorder prediction 1 28 - -
Dod09g2458 912 SUPERFAMILY SWIB/MDM2 domain 598 674 IPR036885 -
Dod09g2458 912 Gene3D - 736 864 IPR036128 GO:0003677
Dod09g2458 912 ProSitePatterns Zinc finger PHD-type signature. 384 444 IPR019786 -
Dod09g2458 912 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 19 186 870 - -
Dod09g2458 912 MobiDBLite consensus disorder prediction 282 302 - -
Dod09g2458 912 Pfam Plus-3 domain 739 842 IPR004343 GO:0003677
Dod09g2458 912 Coils Coil 306 329 - -
Dod09g2458 912 CDD SWIB-MDM2_like 598 673 - -
Dod09g2458 912 CDD PHD5_NSD 383 428 - -
Dod09g2458 912 ProSiteProfiles Zinc finger PHD-type profile. 381 447 IPR019787 -
Dod09g2458 912 SMART swib_2 607 678 IPR019835 -
Dod09g2458 912 MobiDBLite consensus disorder prediction 261 275 - -
Dod09g2458 912 SMART PHD_3 383 429 IPR001965 -
Dod09g2458 912 ProSiteProfiles SWIB/MDM2 domain profile. 592 675 IPR003121 -
Dod09g2458 912 MobiDBLite consensus disorder prediction 146 375 - -
Dod09g2458 912 Coils Coil 245 272 - -
Dod09g2458 912 MobiDBLite consensus disorder prediction 215 242 - -
Dod09g2458 912 MobiDBLite consensus disorder prediction 146 193 - -
Dod09g2458 912 MobiDBLite consensus disorder prediction 545 588 - -
Dod09g2458 912 PANTHER UNCHARACTERIZED 186 870 - -
Dod09g2458 912 Coils Coil 147 167 - -
Dod09g2458 912 MobiDBLite consensus disorder prediction 686 723 - -
Dod09g2458 912 MobiDBLite consensus disorder prediction 12 26 - -
Dod09g2458 912 SUPERFAMILY FYVE/PHD zinc finger 372 429 IPR011011 -
Dod09g2458 912 Pfam SWIB/MDM2 domain 600 673 IPR003121 -
Dod09g2458 912 Coils Coil 213 243 - -
Dod09g2458 912 SMART rtf1 734 844 IPR004343 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g2458 Dod-Chr9 45665139 45671790 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g2458 381 472 PHD Transcription Factor Family AT4G14920 36.082 1.61e-06 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Dod09g2458 Plus-3 6.9e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g2458 - - aip:107608758 1011.91