Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g2456 ATGGATATTGCGGTGGCCAAAGCGTTGAAACCAAGCTTGATGAGAGAGTTCTGGTTCCAGCAGGCACTCGGCAACGAGATTCGGTGCCTGAACGCGAACAACGTGGTGGTTGGTGGTGACGATTTCTCCTTCGTCGACGTCGACGACCTCCTTGACTTCTCCAACGGCGAATTCCAGCACGCCTCCATTCACTACGAACACCAGCACCCACAACAACAACAATACTATGAACAAAAAGACACCTTATCCTTTTCTTCGCACTCACAAGACGATAGCAACTCCAATTCCGCTGGCGTTTCCATTTTCTCCGACGAATTAGCCGTTCCGAACGATGATTTGGCGGAGTTAGAATGGGTTTCTCGCTTTGTGGACGATTCTCTCCCAGAGCCCTCTCTTCTGTACCCGGTTAGGCCCGAGCAGGCCAAGCCCTGGGCCGAACCGGAGCCCAGAGCGTGCTCGGTTCAGAAAACCCCTCGTTTTCCCTCCGAAACGAAAGTCCCCACCAAGGCGAGAACCGAAAAGAGCAGAAAACCCAACGCTCGCGCGTGTTTGTTTATTACCCCCGTGCTCTCACGCCCGTCCTCGCCGTCGTCGTGCTCTTCTTCCGTGGCCTCCTCAACGGCCCACCAGCCGCCGGCGAAGAGGCAAAAGAAACGGGCCGAGGCCCAACAAGAGGGTGGGGCCCAGGCCCAGTTGCAGAGACGGTGCAGTCATTGCCAGGTGCAGAAGACGCCGCAGTGGAGGACCGGCCCACTAGGCGCGAAGACGCTTTGCAACGCGTGTGGGGTTCGGTACAAGTCGGGTCGGCTTTTTGACGAGTACAGACCGGCGTGCAGCCCAACCTTCTCGATCGATGTTCACTCCAACAGCCACCGTAAGGTGTTGGAGATTAGGAAGAGGAAGGGGATGGTTGGACCGGATACCGGTTCGGTTCAGTCTCAATTGGTCCCTAGTTGCTGA 960 0.5646 MDIAVAKALKPSLMREFWFQQALGNEIRCLNANNVVVGGDDFSFVDVDDLLDFSNGEFQHASIHYEHQHPQQQQYYEQKDTLSFSSHSQDDSNSNSAGVSIFSDELAVPNDDLAELEWVSRFVDDSLPEPSLLYPVRPEQAKPWAEPEPRACSVQKTPRFPSETKVPTKARTEKSRKPNARACLFITPVLSRPSSPSSCSSSVASSTAHQPPAKRQKKRAEAQQEGGAQAQLQRRCSHCQVQKTPQWRTGPLGAKTLCNACGVRYKSGRLFDEYRPACSPTFSIDVHSNSHRKVLEIRKRKGMVGPDTGSVQSQLVPSC* 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g2456 319 MobiDBLite consensus disorder prediction 191 233 - -
Dod09g2456 319 ProSiteProfiles GATA-type zinc finger domain profile. 230 266 IPR000679 GO:0006355|GO:0043565
Dod09g2456 319 ProSitePatterns GATA-type zinc finger domain. 236 261 IPR000679 GO:0006355|GO:0043565
Dod09g2456 319 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 230 292 - -
Dod09g2456 319 CDD ZnF_GATA 235 283 IPR000679 GO:0006355|GO:0043565
Dod09g2456 319 MobiDBLite consensus disorder prediction 139 177 - -
Dod09g2456 319 MobiDBLite consensus disorder prediction 78 98 - -
Dod09g2456 319 PIRSF Txn_fac_GATA_plant 26 317 IPR016679 GO:0003677|GO:0005634|GO:0045893
Dod09g2456 319 PANTHER GATA TRANSCRIPTION FACTOR 1 319 - -
Dod09g2456 319 Gene3D - 227 302 IPR013088 GO:0006355|GO:0008270
Dod09g2456 319 Pfam GATA zinc finger 236 269 IPR000679 GO:0006355|GO:0043565
Dod09g2456 319 PANTHER GATA TRANSCRIPTION FACTOR 1 319 - -
Dod09g2456 319 SMART GATA_3 230 284 IPR000679 GO:0006355|GO:0043565
Dod09g2456 319 MobiDBLite consensus disorder prediction 191 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g2456 Dod-Chr9 45638591 45640773 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g2456 47 303 C2C2-Gata Transcription Factor Family AT5G25830 39.655 2.79e-48 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Dod09g2456 GATA 1e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g2456 - - gmx:100808242 330.102