Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g2449 ATGAAGATCCAGTGTGATGTGTGTGACAAAGTGGAGGCCTCTCTATTCTGTCCAGCAGATGAAGCAGCTCTTTGCTACGGCTGTGACCGCACCATCCACCACGCCAACAAGCTCGCAACCAAACACACGCGCTTCCCGCTGCACCACCCCTCCTCTAAAGACACCCCTCGTTGCGATATCTGCCAAGAGAGGCGTGCATATCTATTTTGCCAAGAAGATAGAGCAATACTCTGCAGAGAATGCGACCTTCCAATCCACAAAGCCAACGAACATACCCAGAAGCATAACAGGTTCCTTCTCACGGGTGTGAAGCTCTCTGCAGGCACTTCTTTGGACCCTGCAGCTTCATCATCCACCGATAGAGTACTAGTCAATACCTCTGAGGCAAGAACCTCTCGTTCTAAAATGAACAACAGACCCAGATCAGTTTCAGCTGAATTTGAAAATGTCAGTTCTTCTTGCAAGGTTGAGGACAACATAGCCAGTGACACCGGTTCAGTTTCAACAAGCAGCATATCCGAATACTTGATTGAAACAATACCTGGTTTCTGTTTCGAAGACCTTCTTGATGCTTCATTTCCACCCAATGGTTTCTGTAAGAATTATGATCAATGTTCGGATTTTCAGGACCAAGATCTTGATGACAGTACGTGTTTATTTCCATTGGCGACGTGGATACCTCAAGCTCAATTTCAATTTCAAGTTCAAAGTTCAATCCCCTCAACTTAG 729 0.4595 MKIQCDVCDKVEASLFCPADEAALCYGCDRTIHHANKLATKHTRFPLHHPSSKDTPRCDICQERRAYLFCQEDRAILCRECDLPIHKANEHTQKHNRFLLTGVKLSAGTSLDPAASSSTDRVLVNTSEARTSRSKMNNRPRSVSAEFENVSSSCKVEDNIASDTGSVSTSSISEYLIETIPGFCFEDLLDASFPPNGFCKNYDQCSDFQDQDLDDSTCLFPLATWIPQAQFQFQVQSSIPST* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g2449 242 PANTHER B-BOX ZINC FINGER PROTEIN 20 1 209 - -
Dod09g2449 242 MobiDBLite consensus disorder prediction 116 142 - -
Dod09g2449 242 Pfam B-box zinc finger 55 92 IPR000315 GO:0008270
Dod09g2449 242 CDD Bbox1_BBX-like 5 47 - -
Dod09g2449 242 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Dod09g2449 242 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Dod09g2449 242 Gene3D Classic Zinc Finger 1 98 - -
Dod09g2449 242 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 209 - -
Dod09g2449 242 SMART bboxneu5 53 100 IPR000315 GO:0008270
Dod09g2449 242 SMART bboxneu5 4 47 IPR000315 GO:0008270
Dod09g2449 242 CDD Bbox1_BBX-like 58 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g2449 Dod-Chr9 45553707 45554940 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g2449 1 203 C2C2-CO-like Transcription Factor Family AT1G75540 52.632 2.20e-66 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Dod09g2449 zf-B_box 1.1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g2449 - - gmx:100800981 312.768