Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g2444 ATGGCTAAACCGAAGGCTCCAAGGCGAACCCTAGAGTCATACACAGTCAAACACACTAACAAAACCATCAGAGCGGGGGACTGCGTGCTCATGCGGCCGTCGGATCCGTCGAAACCGTCGTATGTGGCTAGGATCGAGCGGATCGAAGCTGACTCGCGAGGCGCCAACGTGAAGGCTCACGTGCGCTGGTACTACAGGCCGGAGGAGTCCATCGGCGGCCGCCGCCAGTTCCACGGCTCCAAGGAGGTCTTCCTCTCCGATCACTTCGATGTTCAGAGCGCCGACACGATCGAAGGAAAGTGTACCGTCCATAGCTTCAAGAGCTACACCAAGCTCGACGCTGTTGGGAACGACGATTTCTTCTGTCGCTTCGAGTACAACTCCTCCACCGGCGCCTTCAATCCTGACAGAGTCGCCGTGTATTGTAAATGTGAGATGCCCTACAACCCTGATGACCTAATGGTCCAGTGTGAAGGTTGCAGCGATTGGTTTCATCCTGCTTGTATAGACATGACTGTGGAGGAAGCCAAAAGACTTGACCATTTCTTTTGTGAAAGTTGCTCTGCTGAAGGTCAAAAAAAGTTGCAAAACTCTCATTCTGCTTCAAGACACTCAGATACAAAGGTATTTCTAATTACTGTTTGCTGTATTTCGAGTTTGTTTTTGAACACTTAA 675 0.5081 MAKPKAPRRTLESYTVKHTNKTIRAGDCVLMRPSDPSKPSYVARIERIEADSRGANVKAHVRWYYRPEESIGGRRQFHGSKEVFLSDHFDVQSADTIEGKCTVHSFKSYTKLDAVGNDDFFCRFEYNSSTGAFNPDRVAVYCKCEMPYNPDDLMVQCEGCSDWFHPACIDMTVEEAKRLDHFFCESCSAEGQKKLQNSHSASRHSDTKVFLITVCCISSLFLNT* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g2444 224 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 136 203 IPR013083 -
Dod09g2444 224 Pfam PHD-finger 141 189 IPR019787 -
Dod09g2444 224 PANTHER OS08G0421900 PROTEIN 1 209 - -
Dod09g2444 224 PANTHER CHROMATIN REMODELING PROTEIN SHL 1 209 IPR045205 GO:0006325|GO:0035064
Dod09g2444 224 SMART BAH_4 21 137 IPR001025 GO:0003682
Dod09g2444 224 ProSitePatterns Zinc finger PHD-type signature. 142 187 IPR019786 -
Dod09g2444 224 ProSiteProfiles BAH domain profile. 21 137 IPR001025 GO:0003682
Dod09g2444 224 ProSiteProfiles Zinc finger PHD-type profile. 139 190 IPR019787 -
Dod09g2444 224 Pfam BAH domain 22 136 IPR001025 GO:0003682
Dod09g2444 224 SUPERFAMILY FYVE/PHD zinc finger 130 193 IPR011011 -
Dod09g2444 224 SMART PHD_3 141 188 IPR001965 -
Dod09g2444 224 Gene3D - 2 135 IPR043151 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g2444 Dod-Chr9 45517432 45522139 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g2444 41 139 Core DNA Replication Machinery Family AT4G14700 30.303 9.54e-10 56.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Dod09g2444 BAH 2.3e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g2444 - - gmx:100787968 431.795